Detail information of BGIOSGA015140_circ_g.4


General Information
CircRNA Name BGIOSGA015140_circ_g.4
ID in PlantcircBase osi_circ_014331
Alias Chr04:20792826_20796316(MH63RS2), Chr04:20737284_20740778(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18026404-18029898  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ, CIRI2
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.2 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015140-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCAGCA
CCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCACcctgtgaacaatatccataagtacaagc
aaaccaagctcgtgagctttatcaatcagagatttcaagtcttctggggttccgaaacggctac
ttggcgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTGAACAATATCCATAAGTACAAGCAAACCAAGCTCGTGAGCTTTATCAATCAGAGATTTC
AAGTCTTCTGGGGTTCCGAAACGGCTACTTGGCGCAAAGAAGTTAGTAACATGATACCTGTAAA
AAGAATATAACAAAGATCAAACCAGGTCAGAAACAGAAAGAATAGTTGCACTATTGGTGTCCAC
ACAAAGAAATTTGTTCAGAAATTTCTGCATGTTCAGAACACTAAAATTTAAGAACTCTAAATGG
ATCTTGTGAGTACCCAAAGCTTGCGTAATAAGAGTGCTCCTGGATTGCCATTATCTGTACAGCA
TTGTACCCAAGCTTTTTAATTCTTGGTAGCACCTCATCCCTAAAATTAGCATATGTGTTTATCT
TCGGTTCCTGTACAACAGACAATACCGAGTAATTATATTATGCATTATTGGGTACTCACACTAC
AGAACACAAACTTCACAGCTTGTTAGTACAAATCATCTAGGTAAGACAATATGGCATTTCTTGC
CTCCTAAATGCAAAATCTTCAACTGGTAACACAGCCACATTATTTAACAGGCCATTACAATTGT
TAATCATAATAGATATGTTCTGGCAAACAATGTTTAGCTTTACTTTCAAATGCAACAAAAATCA
TACTTCCTCCGTTTCACAATATAAGACTTTCTAGCATTGTCCACATTCATATAGATGTTGATGA
ATCTAGACACATATACATCTATATGAATGTGGGCAATGCTAGAAAGTCTTACATTGTGAAATGG
AGGGAGTACAACAAAAAAAGGAAGATCTAATGAGAACAAAGTTTCACATATGTCAGTCTGAAAA
CATTTTAAAATCTGTGTAGTTTATTACATGGAAAAAACGTGTCTGCTAGATATTAAATTGGAGA
AGGGAAGTACTCTCAGATATGTTGTTAAACCTGCTACATAAATAGAAAGAACTAGATTGCATTC
TACAAAGCGAAAAAGGTTTCAAGACAAAAAAGAAAAGTCAAAATATTAATAACTTATTGGCATA
CCGGGCTACTCATTCCAATATGTGATTCATATATCCGCAGCGAATTTGGTCGTTTAGGTTGAGG
ATGTTGGAATACATATTTTTCCTGCAGTTGCGTATAAACAACATTAGGAGATGGAAAATAAAGG
TTAAAATGGAATATCCTGATCAACAAAGAAAAAAAAGTAGTATTACACAGTTCTATAAGGTTTT
AGTGACACGAGCATAGATTTTTTTAAAAAAAATGCAATGGAAAAATATTTCGTTTAAAGACTGT
AAGGTAGAAACATACTTCTTCAGGTGGATCATAATATATACCGTTGTACGGTATTTCACCTGGA
GCCTGCACAGCAAACTTAATCCAGGCAGGAATTGAATCCTTTACGCCAGATGGTGTATCCATCC
GAATCTGGAAATTAAGAAGGTGAAAGAAGATCTCTCAGTAAGCTCATTTTGAAAATGATTAAAC
CCTCAACTAAGTAAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAGCAG
GGGATCCATCAGCATTGTTAGGCAGGGAAATCTCCCAAACACCATACTCATTCTGAAAGTGATC
ATGCCATATATCAACACTAATAAGAGAAAAAACGTTGCTGGCACATGTAAATAGGCTCGTATGC
TGCGAAATACACCCTTCTCATGTCATATAATAAACCAGTGTGGATGGAAGTGTACAAAATTCAA
GGCAATGTTTGGAAAATGGGTTTGGGATATGATTTCCCACCCCCAAAGGGTAAGTTTTGATCTT
AGCCATCCATTCATTTCACCCATTTCATCCTATCCCTCCATTCATTTCCATTTCCCAATCCCAC
CTCTCCTAACCCATTTTCCAAACACACCCCAAAAGGCTATATTAACCATTAGGATGCAAAATTG
CATGCATGTGTTTACTGTTTACCCTAAACATGAATTCTGCTATTTTGGACTCAAAGAAGATGAT
AGTTAGTAAAGTAAGGAACAGTGCTCTGTTTTCACTGACTTTGAGACAATATAGAGTAGCAGCA
TTTTAGAATGACACACGTGAGGTTCAACTTTAAGGAATATAAACAGAAATAATGAACCCAGATA
ATTGAAAATATATTAATGATACAATACAAAGATGGAAAATAAAAAGGTTGAAGACGTACTCTGG
TCATAGTATCTGCATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTGCAATAG
GATGAAAATGTCATTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAATATATC
ATTTGTGCTACTGGTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAATCACGT
ACCTGTGCTCCAGGTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGGAATAAT
GATATTGAGTTTGATCATTTGATATCCAAGTAGAATATTGTAGGAATTTCTGTAGTAATGCGAC
TTTAATTTTACCTGCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAAGCCACC
TTCATGTTGGTCAATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCACCACGC
ATACCAAAAAAGATATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGATATCAGA
AATTAATTTGCTGAGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCCACATCC
TTTTTGGTATCTCTAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCACCTCTAT
TTTCAAATATTATACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAGTCAAGA
TGGTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTGGTGGTG
GGATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTCAGTCAC
ATTTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACCTTTATG
CTTGCTTCTGCCACTGATGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTATCATCAG
GTATCTACACAGAACATAGATGGATAGACTCTGCATGAGACACCCAAAAAGAAAAAAAGGTACA
TTCTTTTGTGGCAAAGTTGCTAGTTGGAAGACCCAACTTGGTTTTCAGTAGCCCAACAGCCAGC
ACAAGGTCACAATGCACAAAACACATGAAACCTGGCATTGCCACTACATCATTTCATCACACAT
TTGGTCAGTGAATGACAACAGCTCGAATTTTATTCCCGGCATTACCTGAGATTCTTCAGGTTGC
TCTTGAGTTTCCACGTCTGGTTCCGCAGAGGACAGCAAGTCGTCGCTCCCACCGCCAGGCACCA
GCACCTTCCCAGGAGCACCCGCGCAGCTCACAACGCCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021