Detail information of Os01g0390900_circ_g.1


General Information
CircRNA Name Os01g0390900_circ_g.1
ID in PlantcircBase osa_circ_001799
Alias NA
Organism Oryza sativa
Position chr1: 16516228-16516430  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0390900
Parent gene annotation Similar to Dual-specificity protein phosphatase-like protein. (O
s01t0390900-01);Similar to Dual specificity protein phosphatase
9. (Os01t0390900-02)
Parent gene strand -
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.1 Os01g0388500_circ_igg.2 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.1 Os01g0390300_circ_g.2 Os01g0390300_circ_g.3 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.3 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.7 Os01g0390400_circ_g.8 Os01g0390900_circ_g.2
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-CT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGTTCTATGAAATTTAATCAATATAATATTGTTATTAAATAGAAGCAAACACTTTAAATGGT
TGAAACCAAACGACTGTTGGGAAAAAGAATGATTACgctactattattatgataccaaccaaat
ttactctttctgaaatgtcttgcggaagaagtaatgaattattgtcgtgatgccattaattttt
gaaaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTACTATTATTATGATACCAACCAAATTTACTCTTTCTGAAATGTCTTGCGGAAGAAGTAATG
AATTATTGTCGTGATGCCATTAATTTTTGAAAAATAGTTGCAGTTCTATGAAATTTAATCAATA
TAATATTGTTATTAAATAGAAGCAAACACTTTAAATGGTTGAAACCAAACGACTGTTGGGAAAA
AGAATGATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.16912931
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017