Detail information of Os01g0388500_circ_igg.1


General Information
CircRNA Name Os01g0388500_circ_igg.1
ID in PlantcircBase osa_circ_001786
Alias Os_ciR5764
Organism Oryza sativa
Position chr1: 16384431-16386247  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.2 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.1 Os01g0390300_circ_g.2 Os01g0390300_circ_g.3 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.3 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.7 Os01g0390400_circ_g.8 Os01g0390900_circ_g.1 Os01g0390900_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCTTGGTGGTCATTCTATGATACAAACCCATCAGATTTGGCTGGCTGTCAAGGCCTTAATG
GTCCCATGGCCATCGTTGTGTCTGAGGAAACACCTCttggaggatatatatgcaagcttgttcc
ttgtgaaatgcgatgcaattttaaacagggcaaatcaccaacaaggggagaagcaaacgaaaat
gacaaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGAGGATATATATGCAAGCTTGTTCCTTGTGAAATGCGATGCAATTTTAAACAGGGCAAATC
ACCAACAAGGGGAGAAGCAAACGAAAATGACAAAATTCTGCAGCGGGATATGCCTATTCTTTGT
ACTTATCTGTGTTATTTGGGCACCTATGTTGGTAGGTGAATGCCATCTATGTTTTATATTTGCA
CTAATTTTTGTTCTGCCATCCCACTTGTTTGCATCTGCAACTATTCTGGTAATTTTTTTTTCTT
GAATATGCAAGAGAGTTGCATATCATTTCATTAAGAAGAAGAGAAATCGGGGGAACTGGGAGGG
GAGCCCCCTCCCCTCACCAAGACCCCACAGGCCTAGGCCTTTACAAACTCAAGAACCTGAAACC
GACCTTATCCTTGCGGAGCTAGCGACCTATCTAAGAACATTTACTTGGGTCACACAAAACCACA
TTTACTTCTGCATTGTCAGCATCTTTTGGTAGGTTATGTGTTTATCCACCTGTGGGAGTCTAAT
CTTTAATTAGCATGCATGTGAAGCTGCTGCGCTTTCTTCTGTTTCCAGTTAGTTGTTACCACTA
TATATTTCTAGAAAGGAAGCTAACTTTTCTTCTTACTGCCATATTTCATTTTTGCATGATGCCA
TGATTCACGGGGGAATACCTGCAGGCTGCAGCTACTGAATTATGACTGCATGTGTCACTGTCTA
GATTTTAGATTGGTGTGTCATGGTCTACCGTATACGGACCAAATAATTTAGTTTGGTTTGTCAC
ATATCTTTCTCATAAGGACCCTACCATTCAAGCAAGTTCCCATTCATCCTCTTTTTTCTGCTTT
AGTTACCAATTACGAAATTATATTAACAGAAACATTTTCCATAGCAAAATGTGAATGGCATGCC
TTTTTCTGCTTACATAAAACCTAACATGCATCCACTGTGCAACCATGGACCTTTATGGGACATC
ATGGCATTAATGATGTTATTCCATATTTAGCCTTTCTCATTTCAATATTTTTTAGCAGGCCCCA
CATTTTATTAGCTTTTGCAAGGTCTAAAGCCATTTATTTTTCAATTTCAGATATACAGTAGTGG
TAACCCAACAAATATTGCCAACCCTATTATTGATGTAAGTGTTAAGATTGATATAAAAGCTCTT
GGTGGTAGGTTAACCTTTTTTAAAACCACCGTCTGTGAAAAGATACCATGGAAACACATGAGGG
CCTATGATGATGTTGACCCTCTAGATTATTTGGGAGGATATAATGTTGAGGACATTCAACTTAT
TTGTTGCCAACCGGATGCATCGACGATGTGGTTGATACCAGCTCCAGTGCAAACCAGATTCATT
CAATCCCTTGAGGAGACAGAAATGATTTTTGGAAACATGGAGCTTATTTTAAATTGGGATTTTC
TCAGAGCTAGACCAAAAGGGAAGGAACTAGTGAAATATGAGTCACCTGTTGATCGTAGTCCAAG
TGTAGATGATGTTAAACGAGTGCTAAACGGGACTATAAATAGCTTCAGGATAACTGATGCTTAC
CCTAGATACTTTCGGGTTACTGGATCAGGTGAAGTGCGACGATTAGAAGCATCGGTACGCGATA
TGTTTATAGCCTCTTTTTTTCCCATTGGATTTGCTGAGCAGACACTAGTTTAATTTTATCTGTT
TATAAGTGCAGATAGATTCAGTAAGTGGCGAACTGCTCTTGAATAATGGCACTCCTCCTTGGTG
GTCATTCTATGATACAAACCCATCAGATTTGGCTGGCTGTCAAGGCCTTAATGGTCCCATGGCC
ATCGTTGTGTCTGAGGAAACACCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.287445524
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015