Detail information of Os01g0390300_circ_g.1


General Information
CircRNA Name Os01g0390300_circ_g.1
ID in PlantcircBase osa_circ_001789
Alias NA
Organism Oryza sativa
Position chr1: 16475191-16478293  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os01g0390300
Parent gene annotation Nucleic acid-binding, OB-fold domain containing protein. (Os01t0
390300-01);Nucleic acid-binding, OB-fold domain containing prote
in. (Os01t0390300-02)
Parent gene strand -
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.1 Os01g0388500_circ_igg.2 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.2 Os01g0390300_circ_g.3 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.3 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.7 Os01g0390400_circ_g.8 Os01g0390900_circ_g.1 Os01g0390900_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0390300-02:3
Os01t0390300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCTAACCTGCTTGATTGAACCAGCAGCCCGAACATTCCTTGGCAAAATCAATCAAGAACCC
TTGAAGCACCGCTTCAGCCCGTGCAAATCCGGCCCTctgttgttgaggacctgaactgaagatg
aggagaataaaaccaagtctgcttgcaccaattcttccacctataaaaaaaagtaaatcaatca
tcaaagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTGTTGAGGACCTGAACTGAAGATGAGGAGAATAAAACCAAGTCTGCTTGCACCAATTCTT
CCACCTATAAAAAAAAGTAAATCAATCATCAAAGATCACAACATTTAGTATGTGTCAAATTGAC
CAGCACACTATCGCACAGCCTAGTTAAGGAATTCAACCAACCATCAAGTCTGAAACACCTAGAG
TTTGTCTAGGATAAAATGCACAAGCCACAATATGCATGCATGCTTGGCTACTTTTGCTATGAGA
CGTTTGAGAAACACAAAAAACCAAAATTTTGGGACAGACAAAACCTCTTTTAATCACATTGTCT
CATGTTAAAATACTACTGCTGTCATTGAACAGAGAACAACTGTAATATATTAGTAGTTTGGCTC
AAATAAATTTGTAAAAAAAAAATCTACTTTACACAATGGAAAGCAAAGTCTTTGAAAACTAAGG
TTCCAACAATTTGCTAGGCCTTTACTTTTGAGGCAAAACTGAAACAGAGAAAACACTCTAAGCG
GGGACATACATTAAGCCTGATGCATGAGAAAATGTTTCTTTACAGGGCATTGAACCTCCCTCTG
GTCTGATGATTAAATTGCTATACAGCTGATTCTACTCTTTATACACTATAAGATGAAACTAAAC
AAAACCCTATGTATATACAGCAAATGAATGTCTCCAGAATTCATAATGGATTCAAAAGATAATC
GTATGTATATACAGACAAGCAGTAGTATCATGAATGAATAGCCATATATGATGAAATTGTGGGA
GCATGTTGTAGTAATAGCCTCACATTATACAGCAACCATAAATAAAATATCAAAAGCCAAACTC
CAATATCAATACGCAATGTTTTAGAAGCACTGAATACTAATTGCACAATACAAAAATTAATCAT
GCACGAGGCATGTTTAATGTGAAGTAATCAGTATGGCACTAAAGCAAAAAACTGCAGTGACGGA
TACTCCTAAATATAGATATAAGAGGTGCCTTAAAATTATTTTGTGCAATAGTAAGCATGGATCT
GACCTAACATCTTGCACAATTTCATAAAAAAATTGAACTAAGCTTGCAGAAAAGGCAAAAAAAA
AAACATAATAGTCTAAAGGCACACTACCCATGATGCAGAACTATCAAGTCGCTTTAATAGTTTG
ACAACTGCAGCGCTGAAAGCTCAATGAGAAATGTCACTCCGAAGCAGCAGCAGAAAAAGAATGC
TAAAGAGTTTATATATAAAAGCAAAGGCCTAATCAAAGTGCAAAGCTAGTCCATTTTTATCTGC
TCGCTGACCAAATATCCTGCACTATATAATATATATATTTTTTTGTTTCAAAAGGGAAAAGATG
TCTTGCAAGCAACTGTGCCACTCTCCTACTCTCCTAGCCATCATATGAACTCCATACATGTGTA
TGTTTTCCATCCTGCAAATCACTGGGTGTTTATTTAGATTTCAGTTTAATCTGTATAAAAGCGA
GGACAGGTGAGAAGCAAAACTTTTGCTTTGAGGTCGCTGTGCACAGATTGATTAGTTGTATTTT
TTTTACCAGAGAGAACCAATACTTAATAATAGAGGTTATACCTTTAAAACTTCATATGGCTAGC
TTACCTTAAAAATAATTACTAACTTTTCTGAAAAAAAAAATCAGAGATAATGTGCAGAGCTGAA
TGAGAAATGTCACTCCGAAGCAGCAGTACAAAAAGAATGCTAAAAAGAGTTTATATATAAAAGC
AAAGGCCTAATCAAAGTGCAGAGCTAGTCCATTTTTATTTGCTCGCTGACCAAATATCTTGCAC
TATATAAAATATTTTTTTTTTTGTTTCAAAAGGGAAAAGATGTCTTGCAAGCAACTGTGCCACT
CTCCCACTCTCCTAGCCGTCACATAAACTCCATACATGTGTATGTTTTCCATCCTGCAAATCAC
TGGGTGTTTATTTAGATTTCAATTTAATCTGTATAAAAGCGAGGACAGGTGAGAAGCAAAACTT
TTCCTTTGAGGTCGCAGTGCGCAGATTGATTAGTTGTATTTTTTTTTACCAGAGAGAACCAATG
CTTAATAATAGAGGTTATACCTTTAAAACTTCATATGGCTAGCTTACCTTAAAAATAATTACTA
ACTTCTCCGAAAAAAAATCAGAGATAATGTGCAGAAGTTGTGCAGCCATGTAGGATTAAAACGT
CAAATGCACATTTTACAAACTATCGAATGACAGTTTTAATCTTACTTTGGATAAAGGGAGGTAG
AGCTAGAAGCATGAAACGTTGTGAACAACATTTAGAAAGCAGGACAAGCGAGATGTGAATAGCA
AATATATTAGATGGAAAGAGGAAGTTTCACAATAATAGCTCTAAAGCAAGAAAAGATGAGTTCA
GGGACAACAAAGCAAAAACCTAGCCGACTTTGATAAGAACTAAAGATGAGGTGGAGGGAAGCAA
CATCGTTATGGGCAGCAAGGGACAAAATATCAGGAAAGAGAAAGAGAGTACTATGCGAGAAGTG
TGTGCACAAGAACCTATGCAACGGCTACAAAAGGCACTGCAGTGACCGTTATATGGCTGCAATA
ACATAGGAAACCGACAACACGCATGTACCAAGTGATAAGTGTCAGAAATAAGCTATTAATATAG
CGACAAACAAAGCACCATAAATGCACAATATTGAAAAGAAGCAGAAAATAGTGCAAAATAGTAA
TCAATAAACAGAAAAGGAAATACTGAAATAGGGTATGAGAGAGATGGAAATACCTTATACGAAA
CAGCACCCAATGTGTTGACAACGCAGCAGAAGCAATGTAACCAAGAAGATGCCACGCAAGAAAG
ATACCCACAGAAGACAAAGGCCTTGACCGAGAAATAGAAGAAAGGGTAGAAAGGGACGGTCACC
AATAAAGGTGACCAGAGCTGCGCAACAGAAAAAGATTGTTAGCAAACATAAACCTGAAACAGAA
GGCACCACAAATACAGGGGATATTTCCATATCGTTTAAAGCATATATATACAGTAGAAAGAACC
TAACCTGCTTGATTGAACCAGCAGCCCGAACATTCCTTGGCAAAATCAATCAAGAACCCTTGAA
GCACCGCTTCAGCCCGTGCAAATCCGGCCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.196155908
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017