Detail information of Os01g0390300_circ_g.3


General Information
CircRNA Name Os01g0390300_circ_g.3
ID in PlantcircBase osa_circ_001791
Alias Os_ciR2636
Organism Oryza sativa
Position chr1: 16477932-16478293  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0390300
Parent gene annotation Nucleic acid-binding, OB-fold domain containing protein. (Os01t0
390300-01);Nucleic acid-binding, OB-fold domain containing prote
in. (Os01t0390300-02)
Parent gene strand -
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.1 Os01g0388500_circ_igg.2 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.1 Os01g0390300_circ_g.2 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.3 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.7 Os01g0390400_circ_g.8 Os01g0390900_circ_g.1 Os01g0390900_circ_g.2
Support reads 5/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0390300-02:2
Os01t0390300-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCTAACCTGCTTGATTGAACCAGCAGCCCGAACATTCCTTGGCAAAATCAATCAAGAACCC
TTGAAGCACCGCTTCAGCCCGTGCAAATCCGGCCCTcttatacgaaacagcacccaatgtgttg
acaacgcagcagaagcaatgtaaccaagaagatgccacgcaagaaagatacccacagaagacaa
aggccttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 247
Transcript exons: 16477932-16478087,16478203-16478293
CTTATACGAAACAGCACCCAATGTGTTGACAACGCAGCAGAAGCAATGTAACCAAGAAGATGCC
ACGCAAGAAAGATACCCACAGAAGACAAAGGCCTTGACCGAGAAATAGAAGAAAGGGTAGAAAG
GGACGGTCACCAATAAAGGTGACCAGAGCTGCTTGATTGAACCAGCAGCCCGAACATTCCTTGG
CAAAATCAATCAAGAACCCTTGAAGCACCGCTTCAGCCCGTGCAAATCCGGCCCT

Genomic sequence CTTATACGAAACAGCACCCAATGTGTTGACAACGCAGCAGAAGCAATGTAACCAAGAAGATGCC
ACGCAAGAAAGATACCCACAGAAGACAAAGGCCTTGACCGAGAAATAGAAGAAAGGGTAGAAAG
GGACGGTCACCAATAAAGGTGACCAGAGCTGCGCAACAGAAAAAGATTGTTAGCAAACATAAAC
CTGAAACAGAAGGCACCACAAATACAGGGGATATTTCCATATCGTTTAAAGCATATATATACAG
TAGAAAGAACCTAACCTGCTTGATTGAACCAGCAGCCCGAACATTCCTTGGCAAAATCAATCAA
GAACCCTTGAAGCACCGCTTCAGCCCGTGCAAATCCGGCCCT
Conservation Information
Conserved circRNAs osi_circ_017399
PMCS 0.339134438
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017