Detail information of Os01g0388500_circ_igg.2


General Information
CircRNA Name Os01g0388500_circ_igg.2
ID in PlantcircBase osa_circ_001787
Alias NA
Organism Oryza sativa
Position chr1: 16385505-16386247  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.1 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.1 Os01g0390300_circ_g.2 Os01g0390300_circ_g.3 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.3 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.7 Os01g0390400_circ_g.8 Os01g0390900_circ_g.1 Os01g0390900_circ_g.2
Support reads 1
Tissues shoot, root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCTTGGTGGTCATTCTATGATACAAACCCATCAGATTTGGCTGGCTGTCAAGGCCTTAATG
GTCCCATGGCCATCGTTGTGTCTGAGGAAACACCTCatatacagtagtggtaacccaacaaata
ttgccaaccctattattgatgtaagtgttaagattgatataaaagctcttggtggtaggttaac
ctttttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATATACAGTAGTGGTAACCCAACAAATATTGCCAACCCTATTATTGATGTAAGTGTTAAGATTG
ATATAAAAGCTCTTGGTGGTAGGTTAACCTTTTTTAAAACCACCGTCTGTGAAAAGATACCATG
GAAACACATGAGGGCCTATGATGATGTTGACCCTCTAGATTATTTGGGAGGATATAATGTTGAG
GACATTCAACTTATTTGTTGCCAACCGGATGCATCGACGATGTGGTTGATACCAGCTCCAGTGC
AAACCAGATTCATTCAATCCCTTGAGGAGACAGAAATGATTTTTGGAAACATGGAGCTTATTTT
AAATTGGGATTTTCTCAGAGCTAGACCAAAAGGGAAGGAACTAGTGAAATATGAGTCACCTGTT
GATCGTAGTCCAAGTGTAGATGATGTTAAACGAGTGCTAAACGGGACTATAAATAGCTTCAGGA
TAACTGATGCTTACCCTAGATACTTTCGGGTTACTGGATCAGGTGAAGTGCGACGATTAGAAGC
ATCGGTACGCGATATGTTTATAGCCTCTTTTTTTCCCATTGGATTTGCTGAGCAGACACTAGTT
TAATTTTATCTGTTTATAAGTGCAGATAGATTCAGTAAGTGGCGAACTGCTCTTGAATAATGGC
ACTCCTCCTTGGTGGTCATTCTATGATACAAACCCATCAGATTTGGCTGGCTGTCAAGGCCTTA
ATGGTCCCATGGCCATCGTTGTGTCTGAGGAAACACCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.629078009
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017