Detail information of EPlOSAG00000043644_circ_ig.1


General Information
CircRNA Name EPlOSAG00000043644_circ_ig.1
ID in PlantcircBase osa_circ_001784
Alias Os_ciR5763
Organism Oryza sativa
Position chr1: 16370774-16372418  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.1 Os01g0388500_circ_igg.2 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.1 Os01g0390300_circ_g.2 Os01g0390300_circ_g.3 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.3 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.7 Os01g0390400_circ_g.8 Os01g0390900_circ_g.1 Os01g0390900_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCTCTAATTCAGATCAGGCAGAAGGCATGCCAATGTATTGCTGAGAGGATCAGTTTTCAGG
ACTTTCAGTATTAACTTCTTCACTTATGGCTTCCCGttgtcatcagccaaacaagacatacagg
atatggattctcttatgtctctagaaaatgacagcttagcggaggagcttcttccttccagaaa
tgtttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTCATCAGCCAAACAAGACATACAGGATATGGATTCTCTTATGTCTCTAGAAAATGACAGCT
TAGCGGAGGAGCTTCTTCCTTCCAGAAATGTTTTTTTGGTTCGCCAATCTCGGTATGCAAATAA
TTTGTTTATTCCATACTGCATTTGAACTCCTTGCTATGAAGTGAAGTAGGCACACTAGTGCAAA
TATATTGATTCTGGAATTCTTGTAGCACACCTCCCAAGGTCCCGGTGTTTCTAGGCCCTCTTTG
GTTCCTCCATGTAGAAGTCCATGTTTCTTAATTTAGGTGCTATAACAATAGTTTTTATGAAACA
TTAGTGGTTTTGATACCTGTGAATGGTGCACTTGGTGAACATTGTTCACTTAAGATGGTAATGT
ACCAGCAATAGCATTTTAATAAAATCATTAGTTCGGAGTCGAGATATTTCCTATTTGAAGCTGA
ACAGTACTTTTCAATTTACAGCCTTTCTTATTTGATAGTAATAATGTTGTCAACTAGGTTCGAC
ATAATTCCCTCATGTTTCTTCGGTATAGTGATTGTTTTTTCTTCATTTTAAACGTTAATTATTA
TATACCCCCCCCCAAAAAAAACAGCTATTTCTAGTGTTTAAATTTTGTCCCAAAATGTAGCGCT
TTCTCCACCTACCCCCTATCTCAACCATCCCCCATTAAATTTCTCCACCTACTTCCTCTTCTCA
ACTAATCACGACCTTCCCCATTTAATTCCACCACTCCAGAAATGCTTACATTTGCGACAGAGGG
AGTAATTACTAAGTAATTTTTAATATGTATTTTTCATAATCAAGCTAAGATTAAAAAGGATATT
AGTTATTACTCCCTCCGTCCCAAAATATAAGCATTTTTAGCATAGTGACAAGTCAAACATTTTC
AACTTTGACTATTAATAGCAAAAAAATAAAAAATATTAATCATGTAAAATTGATGTTACTAGAT
TTATCATTAAACAACTATCATAATATGCAACTCTTTTTATTTAAAACATCTTACTTTTATAGAT
ATTGTTGGTCAAAGTAGCATCTCTGATACCGTGTCAGGGTCCAAAAATGCTTATATTTTGGGAC
GGAGGGAGTAACAATAAATAAAACCAGTTTGCCAAACTATGTTGAGAAATAAATTTAGTAGACT
CTGTAGGAGACTGTAGATGTAATATGATATCCCACACTTTGATTATATGGATGGATATGTTAAA
GTATTATAAAAATGATGGATATGTATGTTGAAAAAATATTGTGGAAATAATGTAAAGGGTGATG
ATTGGATATGCTTACATGTTGATTTGTAGAATTCAATGAATTGTAGATGATGTTGCATGCTTGC
ATGAGCTTTGTATGTAATTATTGCTTGTAGATGATGAGGTGGCATGTTTGCATGTTGAATTTTA
GGCTTAATGGGTTACAGCTATATAGAGGGTATAGATTTGCAAAATGTATTTATGGGCTTTCAAT
ATGTTTATGTAGGTGTGGTGTAAGTGTGGTTAAATATAATTTCTTTGTATCTGGTGTGCTTCTT
GCTAAATAATTTTCTCTAATTCAGATCAGGCAGAAGGCATGCCAATGTATTGCTGAGAGGATCA
GTTTTCAGGACTTTCAGTATTAACTTCTTCACTTATGGCTTCCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.107898176
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015