Detail information of EPlOSAG00000028235_circ_ig.4


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.4
ID in PlantcircBase osa_circ_009983
Alias NA
Organism Oryza sativa
Position chr11: 26555912-26560820  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11 EPlOSAG00000028235_circ_ig.12
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCGGAGACGCTTGACACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGGCGGCACCAT
TTTAGGAATTTTGTCATTCAATGGATGCTGAAAAATtttcgttggtcagtgattgatctttgat
gaataattcttcaaggtcactgcattcaattccattgcggctcagaaactgcaacacaaagcaa
acgaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTCGTTGGTCAGTGATTGATCTTTGATGAATAATTCTTCAAGGTCACTGCATTCAATTCCATT
GCGGCTCAGAAACTGCAACACAAAGCAAACGAAATTCACATAAATAGCTAGCAAGCATTCAACA
ACTATAAGCATAGGAGAATCAAATACAGGCCATTCGGGCAGTGGAATAGAAGTCATTTAAGAGG
GTAAATATATACATCATAATTGACAGCGAGAGAAAATAAAACATGTAGGAGTAACTACAGAATT
ATAGAAAGGTGCCTTTATGCATGCATGATTGATCATTTGAGGGGAAAAGAGCAAAGTGTCGTTT
AAAACAAAACACTGCTTAGGGTCTAGCTGTCTAGGCATCGCACACCTTTATGCATGCATGATTG
ATCATTTGAGGGGAAAAGAGCAAAGTGTCGTTTAAAACAAAACACTGCTTAGGGTCTAGCTGTC
TAGGCTAGGCATCACACACAAGAAATTTCAGTTTCAAGAGGAATATACAGAATACACGGTTCAA
AACCCAAAGTGCCAAGCATGATATGTGAAATTGTGTTATCTGCACAGCTTACCGTGCGAATGCT
ACCAACATTGGATTTAGCTTTAAGGGTTTCAACGTCACGATCCAGTTGTTGCTTCCAATCTGTG
AGTAATGTTTCATCCTGCAAATTCAGTTGCTTGGATTAGATAATATACTTGAGCATAATACTTG
AACAAGATAACAAGGGATATTAGCACCTGTGGAAGTTGGATCGAAATTTTGTTAGGGAAAAGTT
TATTTAGATGTTTCATTGCCTTCGGACTTTCTTTGTTCCTTTCATGCAACCGACTACCAAAACT
ATCCTGCATTTTAGATATAACAATGCATCAGATAGTTATATCAGAACCATGGGTTCATATAGTG
CATTTATAAGCACTGATAGAAAGAACATTGTGACCAATAAGAATGAAAATTGTTACCGGGAAAA
GGTCAAATAGCGTCTGGCTGCTACTAGCAAACTTTGTAAAAAGAAATCCACCTGGGTGGGCCTA
CAACAGACACCATAGCACAACATCAGGATACATTTTATAGTGTACTTAACAAGCGATAAATGAT
AAGGATTAAAAATTAAAACAAAGATTGCATGCAAACGAACACCCAAGTGTCAAAGAGACAGAAC
CAACCAATTAGAACTGAATACCCAATGCCACCAAAGTTAGTTTTCACAACAGTTCAAATCAAAT
GAAAAAAAAAAGACAAGCTATGCAATGCCACATTGCCATAAACAAGCCCTCATAGAACAAATTT
GCATAATCTCTGAGATATAATATATGTACCTTCTCTTTGCGGCTGTCCATTTGAGTGTGAGATC
CTATAATAAGCACACCAGATGGAAGCGCTTCAAGCTTATTCCTCAAAGATGAAAGTGACTCTGT
AATTCCAGTGAATGATTTCTCTACATCCTTAAGTAACACTATCATAGGGCCAGCTTTGTGTTCC
TCTGAGATGACCTGACAGACAATCCATACAATTATGAAACAATAGAAAGAATACAAATTTATAT
TCGGATAACTCTGAGTTTTAGATAAGAGGCTGTACTTCAATTAACTCGGCCATTGCTAGCCTTT
CAACCTCTTCACCACCAGAAAAGTCAGGGCGAAGTAAGTCAGCTGCAGAAACAAGAATTTATCA
GAACCTGCAAGAACTAACATAATTTTTGGGATTCAAAAGTTTGAGCTAACCAGAGCAGAAGAAA
CCATGATCTTCCTCGCACAAACCACCAAGATCATTACCATCAGGGATCTGCTTGTCAAATCGAA
CTCCAATTTTGGAAGACCCATTTTCTTCAAAAGCAAGCATCACTCTGCCTCGATAACCATAACT
GGGTCCCCTGAAAGGTCAATCAAATATTCAAATGATTTATAAAGAAAATAAATTGAAAGCATGT
TATGGCTACAAAACTACTACCTCCGTTTTTTAATATATGACGTCGTTGACTTTTTGTCACACTT
GACCATTCATCTTATTCAAAAAAATTACTTAATTATAATTTAGTTTGTTGTGAGTTGTTTTATC
AGTCAAAGTACTTTAAGCATGATTTATATCTTATACATTTGCATTTTTTTTAATAATATGAATG
GTCAAACATGTGTTCAAAAGTCAACGGCGCCATCTATTAAAAAACGGAGGGAGTATAGGTTTAT
CAAAAAGCGTGTCAAGCTAACTCTGATGTAACACAATAGGAGCAATGTAGCATAAGTAGAAAGT
AAATCCTAGGTTGTTGGCTACGATACTCCAAGATTAAATATAATAAATTATATTCACTATTAAA
TATTGCATGTAAAGTTGTAAACGAAGTGCTAGAGAGCAATACAAATGATTTAGTCAAGAACAGG
TGGACCTGCGGCCTAAAATGTTGTGAGACAACCCCAACTAGGGATGTCAAACACCGAAAAAAGT
AGCTAAAAAACCGTATTTTCAGTGGAATTACTCTAAGAACTTGAATACAGTCAGGATTTTTAAA
AAATACTTCCCCTATCCAAAATTGTATGTGCCAGAAAAACTAAATAGATTTTCTATTCAGTATT
TTATATCATCCAAAACTATTCATGTTTGAATTTGAATTTGATCAAAGGCGACATGCATTTGTTG
AGTTCTGTCTAACTAGTTGGGTATTTAAAAACACATGTTTCTTTTATTTCCACACTTCGTTACT
CTAGGTTGGGAAATAGATATTTTTATACAACCAAATTGAGTGGGTGATATTTGTATTTGCATTT
GTTGTAAAATTATGTTCGTATTTGTATTCTAGCATACCAACATTCTTATTTGTATTTGTTTATT
TATGAATGTGGTCGTGAATTTCATCAAAATTATTTTGTGTGTTAAATGTAGGGGACAGACAATA
TCTTTCTCCCAAACCATCCAAAGAAACAACCAACCTAATGGCACATCCACAATGTTCATAGCAT
CAATGAGGTTTCGATGGAAAGACAAGGAAGAATCAAGCAATAAACTTTGGTTTAAATATCAGAG
CATGACAATCAGTAAGATACCTTTGCGACAATGACGATTGCTGAGCTGGACCCACATATCTTAC
CCTATCCCCTACAATGGCAGTGCAGTCATGTTCGGGTAAGTATAGCATAGTTGAAAATGATCTA
TCGATAAACAAGAGATAATATCATAGTAGAAAACCTTCTCTAAAAGTATAGCTCTTGGATGTAG
CTGTTGATGATTCCTGTTTGGGCAAAGATGCAGAATGCAGAGTCGATGTACCCACGATATCAGC
ATGCACACTAGAAGGTTGTACAGCTGGCCTCCTGAAGTGCATAGCGTCTGCCAAGGAAGAGCGG
TTCTTATGAAGAATTGCCAACTTCTCACTACCAGCCTTATCCCCTGACTTATCAGACTTCGCAG
CATCTTTCTGCGACTCTGGGTCCTTTGAAGGCGCCTAAAGAGAATTTTGCTCTCAATAATAATA
ATTGACACCAAGTAGTTTTAAGCACAAGTTACATGGATAACTTACCCCAGGCAACAAAAGCGAA
TCAACAACAAGTAGCCTAGCACCGAAATGTTTTGCAAGTGCCTTTATCAATGTTTCCTGATAAA
TCTCCGAACCTGATGCATGTTTGCATTAGAAAAATCAGATGCCTACAAGAATCAGCAAAAAAGG
ATGCACACAGCCTTACCTTCAAGGACCTCAATTTAACTCCGAAGACAATAAATATGCAATGAGA
TCATAAAAGGTACCTGCTGGACCAGATAATAGAATCCGTTGGTTTATTGATGAAATTTCTGAGA
ATTGTTTGATGAATTCCTTCTTTTCCAAGTGTATGAATGCACATGATAAGAGCACATTCTTTGT
GTTATCGCTGCATGAAATGGAGTTGATGAACAACACATGAATACAAGAACACAAACATGTGAGA
GAACAGATATCATGCTACAATTAAAGTTACGTCAGTGGAAGTCTGTAAGAATATGAACATGTGA
GAGAGCAATGAATATCATGCTACATTTAAACTACTTTATCAACCGTGTTGTGCCTATTATCTAA
TGAATGCTATATTGGTATGAACTAATCATACAGAATATAGCGAATTAAGAATAACTAATGAATG
CTATTTTAGTTTTTTTTTAACAATGTAACATCGCAGATATGAAGCATATTAAGAACACAAAATA
AACAGAATAAAAGTTAAAGAATATAGGAAGGAAGATTAACCCAAAGTATATTACCTGAGGTAAT
AAGGAAAATTTTCAAATGTAACATCAATATCATTTGGACTAATAATTCCTTGTTTCATCCCATC
CTTAAAGGCTTGGCATCTGCTTGGAGGTAAACTGGCTGAAGAGTTAAGATGCCTGATGAGATCC
CTCTGATCTTCAAGAGCTTTAAAAAGATCACCAGTCAAATCGAACTCTGATATAGTTGTTCCTG
CAATCATCCTCAGAACTGGCCTTATCTTATAAGTTGCAATCTTACCGATTTCAGCACCAAGATG
AGCATCAGATCCAAAGCCATTGTGTTGACTGATGTCGTTCGGGACAGCATCAGGAGATACTACG
GGGGCTGCAGCCACATCTAATGGAGAATCTTCAACATTAGAATTAACTTCATTAGCATTTTCCC
CGTTCTCACATTCCTTGTCAGGGATGATGCCATTTCCTTTTGATTTATCAGAAGCGGATGATGC
CATAGGTCGTACTAATCTCTGATTGTTCTCTCCAGCTGATGCAGGTGGTGCAGCTGATAGGTCC
TTCAACTGATCAGATACGGATGCTAATAGCTCTGTCCCTGCAACAGCTGAAGTGTCTCCTGTTC
TGTTCTCCATCCGGAGACGCTTGACACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGG
CGGCACCATTTTAGGAATTTTGTCATTCAATGGATGCTGAAAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.11896519
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017