Detail information of 4_circ_ag.13


General Information
CircRNA Name 4_circ_ag.13
ID in PlantcircBase ath_circ_033402
Alias At_ciR405
Organism Arabidpsis thaliana
Position chr4: 14248171-14253148  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 6/13
Tissues leaf/leaf, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGCATCATATTTTCATTACTGCCATACACTGACATTTGATCAGCGCCCAGATTATGGATTCT
TGAAGCGGCTTTTTCGTGATTTATTTTCGCGGGAAGgatatgagtttgactatatatatgactg
gactattataaagtatcagcaatcacagaaaactagaagtcagtctcaggtatagtttatcaat
accatttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATGAGTTTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGAAAACTAG
AAGTCAGTCTCAGGTATAGTTTATCAATACCATTTGTTATTTTTTTTTCTCCAGGTGTATGCAT
ATTTTGTCTTGTTCATAGAGAAGATTTCCTGGGGAGAAGTTTTACTTGGTTTTGCTATTTTTTA
GTTTTGGTGCTAAATATAGATATGCCTGTCTTCCTAACAATAAACTGTCATGCTGCAGGCCGTT
CCTGGGTCTAGTAATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGTCAGCTCGAGT
TATAAATTTTAATTGTGTCACTTTCTGATTAATTTTGTAATAGTATATGATGTGTTTTTTGTTT
TCTCTCGACTTTCACACTGGACTCAACTGGCATAGAGTGTTTGGCTGATTTAGTTTCCCGTTGC
AACTGTTTATTTCAATATCTTGATGCTAACTCTCCGTTTGGCAGGAGGAACTAAGATTTCACAT
GAAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTAATA
CCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAATGTACGTGCTTATTCATTTGC
CTCTTCCAAATAAATGTTGTATCCTGCAACCCTCCCCCTTGTGTTAGCATCTCATGCCTGCATC
TGTGTTGCTTCAGAGTTCTGCATGGTTCTCTGCTTAAAGCTTTTACCTGTTTTGCATGGTCAAT
TGTCATCAACGAGCTCTATATTGTGATATGAACTACATATAGCATAAATGATTAAAACACGATA
CTGATCATCACGAAATATGCTCTTGACCATTATTTTACTGAAAACCCATTGCAGATGAACATGC
CATCATCCACTTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAAA
TTCTGGGTTTGGGAGCGGGAATAAAACCGGCGGTTGGACTTCACCATTCATGTCACCGGGGAAA
TGATGCAAAAAAAGTTGGAGTATATCATTCATCTGATCTGCTGAGCAAGATTATGTGTGCCTTT
GGGTCTAAACTGTGATTTCTGCAGTGAAAAGCTCTAGACTGAGGTTGAAGATCTGAATGGAGTT
TTTCCATGAACAGCTTACTGTTTGACAAAAGGCATGAAGATTATGTTTGCTTTCCTTCAAGATT
CTCACAAATGACTGACTTCAACCTTTGTATAAAATCTTGCAACCGGGCGTGTAATTTGGTTCTT
GTGATTCATTCTCCCAAGTTTTCTTCTATAAAACTTTGTTCGTATTTCTGTACGTAGTTCCCTG
TGTTGGGGCATAACCTGGGTTTGCTGTGTCATCAACATTGTTTGCAGAAAATCAAGAGCAAAGC
ATGAGCAGCTTCAGCAGAGATGCCTTCAAAGGCTTGAGTCAAGAGTTGCTTGTGGCAGGGACAT
GTCACCATCAAGCTAATGTGCAGCTGACGAGAACGTAAAAGGATAAGCTATGGCTAGCTTCTGG
AATGCTCCGAGAAACACTTCCCCCTTTTTTTTTCTCTGAATTTCCTATTCAGTTTAATGGTATT
CTGTGTTTGATTTTTCTTACTCGATTTTGTGCATTGAAAAAAATTATATCAAAAAGCTTGACTT
GATCCAAACATGCATTTTCAATTGCTATTATTAAAAAAAAAAAACGTATAAAATTGTAGTCTCA
ATATTGAAATACAAACACCTAGAATTGATCGATTTGGTAGAGAACTAGTTAGTGGATTAAATTT
GGGTTGGCTGATTTTCGAGCCATAAACTATTTCGATTCTCAGCTTTCACACCCGGACTTTTGGG
CCTTTAAATTTCCACCATCAACTTTCATATTCCCAAAATTACATCATCTATTTTTGGATTCATG
CTTAAACATACATTTCCAATTGAACCATTCATTTAACCGGGATTAACCACAAATCCGCGTTTAC
TGTACCGCGATTGCGATTAACCCAACTAATACCCAGACCCGTTAAGAAAACGACGTCGTTTTCA
TTTCGTTTAACTCATCAAAAAGAGAAAGAAAACGACGTCGTTTTCATTCTTCTTCTTTAACTCT
CAAATCGATTTAGTCGTTCTTCTTTAATCTCGACACTGTGAAATTAGGGTTCTTGAGAGAGAAA
GACAAAAGGGGATTTGGGGTTTTCTTCTTCGGTTCGAATTTTTGGGTCTCGATTTGGGTTTCGA
ATAGGGAGAAATGAAGAATTGGTGGGAGGAAAGATTGATTTACCAAAGCGATCCAGATGACCCC
GATTTCGAACCTCCAGAGAGTGACATTGAAGCCGACGATGGAAGTGATAGTGGTGATAGCGGAG
TCGAGGAGGACGAAGCCACCAGAATCGAGGGAGAGGACGTCGGGATAGATGGAGACAGAGCTTC
TGATGGAGAGGAAAATAGAGAAGACGATGGTGACATAGCGTCTGATGGAGACGTCAATCTAGAA
GACGATGGAGACAGAGATGAAAGTCAAAAGAAGAGGACTACCAAATCGATTTGAGAGTTAAAGA
AGAAGAATGAAAACGACGTCGTTTTCTTAACGGGTCTGGGTATTAGTCGGGTTAATCACAATCG
CGGTACAGTAAACGCGGATTTGTGGTTAATCCCGGTTAAATGAATGGTTCAATTGAAAATGTAT
GTTTAATCATGAATTCGAAAGTAGATGATGTAATTTTGAGGAATATGAAAATTGATGGTGGAAA
TTTAAGGGCCCAAAAATCCGGGAGTGAAAACTAAGAATCGAAATAGTTTATGACTCGAAAATCA
GCCAACCCATTAAATTTTCGAACCTTCATCATTTTGCAGACCCCAAAAACGGAAATCATCAAAT
CATCCACCGTGCCAGCGTGACATTACAAAATCACGTAAATACCCTCGTGTTTGTTTATAAGGTA
AAAAAAGATTGGCGGACCCAAAATGGTGCAGTAGTTAGGTGTACAAATTTTTTTTTGAAGGATC
ACTACTACGGCTCAAACAAGCCTGGGTCCATGTCACTACCACCGATGTCAGTCAAACAAAAATA
ATAATATATGTTTTTAAGTTCCTCTAATTTCAATCTTCTAAACAACAACCCTAAATCCTTATCT
CTATCCTTGCGCTTGATCCAGATTCGGTTCTGATTGGAGCTGCCATGGAACGCATCATCGGCGG
CAAGTACAAGCTCGGACGGAAGATCGGCGGTGGTTCGTTCGGAGAGATTTTTCTAGGTTTTGTG
TTCTCCTCTGTTCTTGTCCCTTTGGTTTTCCGAGTTTGCTTTTTTATTTGAAATTGACGCTCTT
CTCTTCTGTTTGTTGTTTTCGCAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGAT
CGTAAGTCCCAGCTCAATTTGCCTTGAGACGAATTGAATCCATCCAATCTGGAGATTTGATTTG
GATCTGCTATGTCTCTTAATTGATTTTGTTTGAATTGCTTTACTCTAAAATTGAGCAAGGTTTT
AAACTCGGTGCTTTTTAGCTGCAATATATTCTTCAAGCTAACACTTGTTTTTAATTCAATCATT
TTCTCTTGCAGGAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTATATAG
AATTCTTGAAGGAGGAAGTATGATTCTCTTTCCTCTCTTTTCTCAGTTGTTGGACATTGGAGGG
ATTCATTAGCAGTACAATACTAATTTTTATGTTATGTGTCAGGTGGAATTCCGCGCATAAAATG
GTTTGGAGTTGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGAT
CTTTTCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGG
TATGGCATGACTTTCAACTATTCATTAGGCTATTTATAATATCTGTTGACTTATACATTGATTA
TCTAATGTGCTTCCGATTTTCTTATCCCGCTGTTACAGCTAACAAGAATAGAATTTGTACATTC
GAAAGGATATCTGCATAGAGATATTAAACCCGATAACTTCCTCATGGGCCTAGGTCGGAAAGCA
AATCAGGTATATTTCTGCAACTTCTTATCTTCATCAGATGCCATAAGTAGAGTATGGTATGATT
GATAAGTCTCATTTTTCAGGTTTATCTAATTGACTTTGGACTTGCCAAAAGATATCGGGATGCC
AACACCAACCGCCACATCCCTTACAGGTATTGTGGCCTTGGTTCAATATACAGATTGTAAATGA
TCTATCTGTTTTTAAGTTTTACGGTCACGTTAATCATTATACAACTTATTTCCTTTATTCGGCT
ATATTCAGGGAAAACAAGAATTTAACAGGAACTGCACGATATGCAAGTTGCAATACACATCTTG
GAATTGGTAAGAAATGCTGGCATTCTTTATCCTTATGTAAAAGTAAATCGCTTTTGCTCATATT
TTGGGTTCTCTTCACAGAGCAAAGTCGACGGGATGATCTAGAATCGCTGGGATATGTGCTTCTG
TATTTCCTAAGAGGAAGGTGTGTTGTCTTTTTGAAAGAAACTAGTTAACATTATGTTATTTCGC
AGGGTATTTCTATTCCTTGTTTTTAGAGATTTACTTAACTGTTTTTTGTGTTCCTCATTTCATG
AACGTCCTTTTCTAGTCTTCCATGGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGAT
AAAATCTGTGAGAAGAAGATATCAACTCCCATTGAGGTATGTTTCCCTATTGTGTGATTGATTC
TTTTTTTGTTAATCCTCATTCGACTAAGTATATATCGATATCCCATTGCAGGTGCTATGCAAAA
ATCACCCTGTGGAGTTTGCATCATATTTTCATTACTGCCATACACTGACATTTGATCAGCGCCC
AGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTTTCGCGGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.584400573
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017