Plant Circular RNA Database

Detail information of Os12g0567800_circ_ag.2

			
						 General Information
					
						CircRNA Name
						Os12g0567800_circ_ag.2
					
						ID in PlantcircBase
						osa_circ_012041
					
						Alias
						Os_ciR7
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 23353045-23383807  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_igg.1 Os12g0567800_circ_ag.3 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568200_circ_ag.2 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5 						
					
						Support reads
						24421
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os12g0567800_circ_ag.2
ID in PlantcircBase	osa_circ_012041
Alias	Os_ciR7
Organism	Oryza sativa
Position	chr12: 23353045-23383807 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_igg.1 Os12g0567800_circ_ag.3 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568200_circ_ag.2 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5
Support reads	24421
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCAGAGATATCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTG
GTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTTccgcagccaccgctgcatccgcaggaac
cacagttgcaacttccaccgcacgacatcttgatcttctgggtcacttgtaaactcttcaggaa
cttgtata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 468
Transcript exons: 23353045-23353225,23379278-23379310,23379867-23379982,23
383518-23383570,23383723-23383807
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGTGTTCTTCTCT
GCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAA
CTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAA
TGAGGTGTTGATGGGCAGCCTCACCAGATTCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCC
CCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAG
CCAGGTCAGGGTACATCTTT
Transcript length: 485
Transcript exons: 23353045-23353235,23379272-23379310,23379867-23380004,23
383539-23383570,23383723-23383807
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCT
GGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGCAGCT
CGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTC
AGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGAGCTGCCTTGCCAACC
ATCACCTCAAAGTGCCCCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGT
GGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 503
Transcript exons: 23353045-23353237,23379285-23379310,23379867-23379975,23
383481-23383570,23383723-23383807
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA
GCTCTGCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGT
TGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATA
TGCAATGAAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGAT
TCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCCCCCTTCTCAGGTGCAACGCCGAGGACAGT
GGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 527
Transcript exons: 23353045-23353244,23379277-23379310,23379867-23379990,23
383487-23383570,23383723-23383807
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA
GAATTATGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGC
AGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATT
CTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGCACTTGCAGCTGGAGCCACAGCTG
CAGCCATGGGCAGCCTCACCAGATTCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCCCCCTT
CTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGG
TCAGGGTACATCTTT
Transcript length: 564
Transcript exons: 23353045-23353230,23379268-23379310,23379866-23380025,23
383485-23383570,23383719-23383807
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGTGGTG
GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCCGCAGCCGCCACCGCATCCGCAGCT
CGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTC
AGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGTGCAATTGCCCAGCAG
AGCACGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCAGCTG
CCTTGCCAACCATCACCTCAAAGTGCCCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGT
TGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TTCAGAGATATCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTG GTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTTccgcagccaccgctgcatccgcaggaac cacagttgcaacttccaccgcacgacatcttgatcttctgggtcacttgtaaactcttcaggaa cttgtata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 468 Transcript exons: 23353045-23353225,23379278-23379310,23379867-23379982,23 383518-23383570,23383723-23383807 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGTGTTCTTCTCT GCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAA CTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAA TGAGGTGTTGATGGGCAGCCTCACCAGATTCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCC CCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAG CCAGGTCAGGGTACATCTTT Transcript length: 485 Transcript exons: 23353045-23353235,23379272-23379310,23379867-23380004,23 383539-23383570,23383723-23383807 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCT GGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGCAGCT CGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTC AGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGAGCTGCCTTGCCAACC ATCACCTCAAAGTGCCCCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGT GGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 503 Transcript exons: 23353045-23353237,23379285-23379310,23379867-23379975,23 383481-23383570,23383723-23383807 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA GCTCTGCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGT TGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATA TGCAATGAAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGAT TCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCCCCCTTCTCAGGTGCAACGCCGAGGACAGT GGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 527 Transcript exons: 23353045-23353244,23379277-23379310,23379867-23379990,23 383487-23383570,23383723-23383807 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA GAATTATGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCGCAGCCGCCACCGCATCCGC AGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATT CTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGCACTTGCAGCTGGAGCCACAGCTG CAGCCATGGGCAGCCTCACCAGATTCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCCCCCTT CTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGG TCAGGGTACATCTTT Transcript length: 564 Transcript exons: 23353045-23353230,23379268-23379310,23379866-23380025,23 383485-23383570,23383719-23383807 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGTGGTG GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCCGCAGCCGCCACCGCATCCGCAGCT CGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTC AGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGTGCAATTGCCCAGCAG AGCACGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCAGCTG CCTTGCCAACCATCACCTCAAAGTGCCCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGT TGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.540968268

Conservation Information
Conserved circRNAs	NA
PMCS	0.540968268

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os12g0567800_circ_ag.2

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