Plant Circular RNA Database

Detail information of Os12g0567800_circ_igg.1

			
						 General Information
					
						CircRNA Name
						Os12g0567800_circ_igg.1
					
						ID in PlantcircBase
						osa_circ_012040
					
						Alias
						Os_ciR35
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 23353045-23379309  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_ag.2 Os12g0567800_circ_ag.3 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568200_circ_ag.2 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5 						
					
						Support reads
						2261
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os12g0567800_circ_igg.1
ID in PlantcircBase	osa_circ_012040
Alias	Os_ciR35
Organism	Oryza sativa
Position	chr12: 23353045-23379309 JBrowse»
Reference genome	IRGSP-1.0.38
Type	igg-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_ag.2 Os12g0567800_circ_ag.3 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568200_circ_ag.2 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5
Support reads	2261
Tissues	root
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GAAATATATGTTACTTTACCCCTTTTCAGGTGCAACACCGAGGACCATGGTCACTGAGGTGGTG
GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTccgcagccaccgctgcatccgcaggaac
cacagttgcaacttccaccgcacgacatcttgatcttctgggtcacttgtaaactcttcaggaa
cttgtata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 178
Transcript exons: 23353045-23353198,23379286-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCTCTGCCAGGTCAGGGTACATCTTT
Transcript length: 179
Transcript exons: 23353045-23353184,23379271-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
Transcript length: 190
Transcript exons: 23353045-23353196,23379272-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
Transcript length: 194
Transcript exons: 23353045-23353205,23379277-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTGTGTTCTTCTCTGCCAGGTCAGGGTACATCT
TT
Transcript length: 228
Transcript exons: 23353045-23353230,23379268-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGTGGTG
GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
Transcript length: 229
Transcript exons: 23353045-23353235,23379272-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCT
GGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
Transcript length: 236
Transcript exons: 23353045-23353237,23379267-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA
GGGTGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
Transcript length: 241
Transcript exons: 23353045-23353243,23379268-23379309
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA
GAATTATGTGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	GAAATATATGTTACTTTACCCCTTTTCAGGTGCAACACCGAGGACCATGGTCACTGAGGTGGTG GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTccgcagccaccgctgcatccgcaggaac cacagttgcaacttccaccgcacgacatcttgatcttctgggtcacttgtaaactcttcaggaa cttgtata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 178 Transcript exons: 23353045-23353198,23379286-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCTCTGCCAGGTCAGGGTACATCTTT Transcript length: 179 Transcript exons: 23353045-23353184,23379271-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT Transcript length: 190 Transcript exons: 23353045-23353196,23379272-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT Transcript length: 194 Transcript exons: 23353045-23353205,23379277-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTGTGTTCTTCTCTGCCAGGTCAGGGTACATCT TT Transcript length: 228 Transcript exons: 23353045-23353230,23379268-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGTGGTG GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT Transcript length: 229 Transcript exons: 23353045-23353235,23379272-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCT GGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT Transcript length: 236 Transcript exons: 23353045-23353237,23379267-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA GGGTGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT Transcript length: 241 Transcript exons: 23353045-23353243,23379268-23379309 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA GAATTATGTGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.289801304

Conservation Information
Conserved circRNAs	NA
PMCS	0.289801304

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os12g0567800_circ_igg.1

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