Plant Circular RNA Database

Detail information of Os12g0567800_circ_ag.3

			
						 General Information
					
						CircRNA Name
						Os12g0567800_circ_ag.3
					
						ID in PlantcircBase
						osa_circ_012042
					
						Alias
						Os_ciR226
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 23353045-23390992  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_igg.1 Os12g0567800_circ_ag.2 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568200_circ_ag.2 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5 						
					
						Support reads
						3385
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os12g0567800_circ_ag.3
ID in PlantcircBase	osa_circ_012042
Alias	Os_ciR226
Organism	Oryza sativa
Position	chr12: 23353045-23390992 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_igg.1 Os12g0567800_circ_ag.2 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568200_circ_ag.2 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5
Support reads	3385
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTG
GTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTTccgcagccaccgctgcatccgcaggaac
cacagttgcaacttccaccgcacgacatcttgatcttctgggtcacttgtaaactcttcaggaa
cttgtata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1010
Transcript exons: 23353045-23353196,23379272-23379310,23379867-23379994,23
383474-23383570,23383722-23383810,23384049-23384234,2339
0567-23390799,23390907-23390992
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCC
CGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTAAT
CTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGC
AGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTC
AGCTGCCTTGCCAACCATCACCTCAAAGTGCCACCCCTTCTCAGGTGCAACGCCGAGGACAGTG
GTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTTCTGCCCGCAG
CCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCTTCTGGG
TCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTTGATATG
AACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGCCTGATTCGCACA
TGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTAT
TCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTG
CAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTG
CCTTGCCAACCATCACCTCAAAATGCCTACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTG
CAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 1117
Transcript exons: 23353045-23353196,23379270-23379310,23379867-23379999,23
383488-23383570,23383678-23383810,23384049-23384234,2339
0572-23390799,23390832-23390992
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT
CCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTA
ATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGA
GGTGAGGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCAGCTGCC
TTGCCAACCATCACCTCAAAGTGCCCTTCTGTTTACTTTTTGATCGGGGAAAAGATTCAGAGAT
ATCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATC
TTCTCAGCCAGGTCAGGGTACATCTTTCTGCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAG
TTACAACTTCCACCGCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGT
GTAGTTGGATGAAATGAGAGATTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATT
TATAGTAGTAGTACCCTTGAGAAGTTCGCACATGGTTGAGACAAACACACACACACACAGGCAT
GAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAAT
TCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCT
GCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGTTT
CAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATAT
CATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGA
TCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 1121
Transcript exons: 23353045-23353205,23379277-23379310,23379867-23379999,23
383469-23383570,23383640-23383810,23384050-23384252,2339
0568-23390799,23390908-23390992
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTGTGTTCTTCTCTGCCAGGTCAGGGTACATCT
TTCCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCT
TAATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTT
GAGGTGAGTTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCA
GCCTCACCAGATTCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCGTTCATGTCTGAAACTCA
GGTAGGATTTTTTTTTTCTTCTTCTGTTTACTTTTTGATCGGGGAAAAGATTCAGAGATATCAT
ACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTC
AGCCAGGTCAGGGTACATCTTTCTGCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAA
CTTCCACCGCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTT
GGATGAAATGAGAGATTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGT
AGTAGTACCCTTGAGAAGAAGCTGCGGAATTATGTCCTGATTCGCACATGGTTGAGACAAACAC
ACACACACACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGG
CTGGTGCATTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGC
AGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCAC
CTCAAAATGCCTCCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTG
TTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 1195
Transcript exons: 23353045-23353230,23379268-23379310,23379866-23380025,23
383485-23383570,23383719-23383810,23384049-23384242,2339
0559-23390992
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGTGGTG
GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCCGCAGCCGCCACCGCATCCGCAGCT
CGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTC
AGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGTGCAATTGCCCAGCAG
AGCACGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCAGCTG
CCTTGCCAACCATCACCTCAAAGTGCCCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGT
TGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTTCTGCCCGCAGCC
ACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCTTCTGGGTC
TCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTTGATATGAA
CTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGCGTTTTGAC
ACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATG
GACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTT
GGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTC
ACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCAAAGAAACAAGCCAAATTCA
GCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAA
AGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGT
GATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 1221
Transcript exons: 23353045-23353237,23379267-23379310,23379866-23380005,23
383469-23383571,23383702-23383817,23384049-23384245,2339
0565-23390992
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA
GGGTGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCCGCAGCCGCCACCGCAT
CCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTA
AATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGTTTTAGCA
GTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCA
GCTGCCTTGCCAACCATCACCTCAAAGTGCCTAAAAGATTCAGAGATATCATACCCCTTCTCAG
GTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGG
GTACATCTTTCTGAACCAAGCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTC
CACCGCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGAT
GAAATGAGAGATTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTA
GTACCCTTGAGAAGAAGCTGCGGAACACCTGATTCGCACATGGTTGAGACAAACACACACACAC
ACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCA
TTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAG
CCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAAT
GCCTGCAAAGAAACAAGCCAAATTCAGCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATT
TTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCA
ACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACA
TCTTT
Transcript length: 828
Transcript exons: 23353045-23353242,23379287-23379310,23383543-23383570,23
383722-23383808,23384050-23384167,23390559-23390799,2339
0861-23390992
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA
GAATTACTGCCAGGTCAGGGTACATCTTTCGCCTTGCCAACCATCACCTCAAAGTGCCACCCCT
TCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAG
GTCAGGGTACATCTTTCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACC
GCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAA
TGAGAGATTTTGACACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGC
CATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAG
TCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAG
CCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTTCTTCTGG
TTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGG
ACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 857
Transcript exons: 23353045-23353198,23379286-23379310,23383723-23383808,23
384049-23384234,23390567-23390799,23390820-23390992
CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC
GATATGAACTCAGTTCAATATGCCCCTCTGCCAGGTCAGGGTACATCTTTCCCCCTTCTCAGGT
GCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGT
ACATCTTTCCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGAC
ATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGA
TTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAG
AAGCCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGA
TGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATC
TTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCC
TCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTCAGCAAATAAGAGTTTCAGG
CATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATT
CATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTT
CTCAGCCAGGTCAGGGTACATCTTT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTG GTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTTccgcagccaccgctgcatccgcaggaac cacagttgcaacttccaccgcacgacatcttgatcttctgggtcacttgtaaactcttcaggaa cttgtata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1010 Transcript exons: 23353045-23353196,23379272-23379310,23379867-23379994,23 383474-23383570,23383722-23383810,23384049-23384234,2339 0567-23390799,23390907-23390992 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCC CGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTAAT CTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGC AGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTC AGCTGCCTTGCCAACCATCACCTCAAAGTGCCACCCCTTCTCAGGTGCAACGCCGAGGACAGTG GTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTTCTGCCCGCAG CCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCTTCTGGG TCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTTGATATG AACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGCCTGATTCGCACA TGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTAT TCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTG CAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTG CCTTGCCAACCATCACCTCAAAATGCCTACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTG CAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 1117 Transcript exons: 23353045-23353196,23379270-23379310,23379867-23379999,23 383488-23383570,23383678-23383810,23384049-23384234,2339 0572-23390799,23390832-23390992 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTT CCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTA ATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGA GGTGAGGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCAGCTGCC TTGCCAACCATCACCTCAAAGTGCCCTTCTGTTTACTTTTTGATCGGGGAAAAGATTCAGAGAT ATCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATC TTCTCAGCCAGGTCAGGGTACATCTTTCTGCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAG TTACAACTTCCACCGCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGT GTAGTTGGATGAAATGAGAGATTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATT TATAGTAGTAGTACCCTTGAGAAGTTCGCACATGGTTGAGACAAACACACACACACACAGGCAT GAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAAT TCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCT GCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGTTT CAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATAT CATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGA TCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 1121 Transcript exons: 23353045-23353205,23379277-23379310,23379867-23379999,23 383469-23383570,23383640-23383810,23384050-23384252,2339 0568-23390799,23390908-23390992 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTGTGTTCTTCTCTGCCAGGTCAGGGTACATCT TTCCCGCAGCCGCCACCGCATCCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCT TAATCTTCTAAATCTCTTGTAAATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTT GAGGTGAGTTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCA GCCTCACCAGATTCAGCTGCCTTGCCAACCATCACCTCAAAGTGCCGTTCATGTCTGAAACTCA GGTAGGATTTTTTTTTTCTTCTTCTGTTTACTTTTTGATCGGGGAAAAGATTCAGAGATATCAT ACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTC AGCCAGGTCAGGGTACATCTTTCTGCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAA CTTCCACCGCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTT GGATGAAATGAGAGATTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGT AGTAGTACCCTTGAGAAGAAGCTGCGGAATTATGTCCTGATTCGCACATGGTTGAGACAAACAC ACACACACACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGG CTGGTGCATTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGC AGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCAC CTCAAAATGCCTCCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTG TTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 1195 Transcript exons: 23353045-23353230,23379268-23379310,23379866-23380025,23 383485-23383570,23383719-23383810,23384049-23384242,2339 0559-23390992 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGTGGTG GTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCCGCAGCCGCCACCGCATCCGCAGCT CGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTAAATTCTTC AGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGTGCAATTGCCCAGCAG AGCACGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCAGCTG CCTTGCCAACCATCACCTCAAAGTGCCCATACCCCTTCTCAGGTGCAACGCCGAGGACAGTGGT TGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGTACATCTTTCTGCCCGCAGCC ACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCTTCTGGGTC TCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTTGATATGAA CTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGCGTTTTGAC ACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATG GACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTT GGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTC ACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCAAAGAAACAAGCCAAATTCA GCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAA AGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGT GATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 1221 Transcript exons: 23353045-23353237,23379267-23379310,23379866-23380005,23 383469-23383571,23383702-23383817,23384049-23384245,2339 0565-23390992 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA GGGTGGTGGTGGTGTTCTTCTCTGCCAGGTCAGGGTACATCTTTCCCCGCAGCCGCCACCGCAT CCGCAGCTCGAACCGCAGTTGCAACTTCCACCACACGACATCTTAATCTTCTAAATCTCTTGTA AATTCTTCAGGAAATTATATGCAATGAGGTGTTGAGAACGCTTGAGGTGAGCTCAGTTTTAGCA GTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGATTCA GCTGCCTTGCCAACCATCACCTCAAAGTGCCTAAAAGATTCAGAGATATCATACCCCTTCTCAG GTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGG GTACATCTTTCTGAACCAAGCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTC CACCGCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGAT GAAATGAGAGATTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTA GTACCCTTGAGAAGAAGCTGCGGAACACCTGATTCGCACATGGTTGAGACAAACACACACACAC ACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCA TTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAG CCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAAT GCCTGCAAAGAAACAAGCCAAATTCAGCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATT TTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCA ACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACA TCTTT Transcript length: 828 Transcript exons: 23353045-23353242,23379287-23379310,23383543-23383570,23 383722-23383808,23384050-23384167,23390559-23390799,2339 0861-23390992 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCCCTATTTATAGTAGTAGTACGCTTGAGAAGAAGCTGCA GAATTACTGCCAGGTCAGGGTACATCTTTCGCCTTGCCAACCATCACCTCAAAGTGCCACCCCT TCTCAGGTGCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAG GTCAGGGTACATCTTTCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACC GCACGACATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAA TGAGAGATTTTGACACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGC CATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAG TCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAG CCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTTCTTCTGG TTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGG ACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 857 Transcript exons: 23353045-23353198,23379286-23379310,23383723-23383808,23 384049-23384234,23390567-23390799,23390820-23390992 CCGCAGCCACCGCTGCATCCGCAGGAACCACAGTTGCAACTTCCACCGCACGACATCTTGATCT TCTGGGTCACTTGTAAACTCTTCAGGAACTTGTATAGTTGGATGAAATGAGAGATTGAAAGCTC GATATGAACTCAGTTCAATATGCCCCTCTGCCAGGTCAGGGTACATCTTTCCCCCTTCTCAGGT GCAACGCCGAGGACAGTGGTTGCAGTAGTGGTGGTGGTGGTGATCTTCTCAGCCAGGTCAGGGT ACATCTTTCCCCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGAC ATCTTGATCTTCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGA TTGAAAGCTTGATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAG AAGCCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGA TGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATC TTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCC TCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTCAGCAAATAAGAGTTTCAGG CATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATT CATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTT CTCAGCCAGGTCAGGGTACATCTTT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.544733095

Conservation Information
Conserved circRNAs	NA
PMCS	0.544733095

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR2919 osa-miR2919 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR2919 osa-miR2919
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os12g0567800_circ_ag.3

Address

Any questions?

Supported by