Plant Circular RNA Database

Detail information of Os12g0568200_circ_ag.2

			
						 General Information
					
						CircRNA Name
						Os12g0568200_circ_ag.2
					
						ID in PlantcircBase
						osa_circ_012048
					
						Alias
						Os_ciR225
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 23384050-23390992  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_igg.1 Os12g0567800_circ_ag.2 Os12g0567800_circ_ag.3 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5 						
					
						Support reads
						6880
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os12g0568200_circ_ag.2
ID in PlantcircBase	osa_circ_012048
Alias	Os_ciR225
Organism	Oryza sativa
Position	chr12: 23384050-23390992 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os12g0567800_circ_g.1 Os12g0567800_circ_ag.1 Os12g0567800_circ_g.2 Os12g0567800_circ_g.3 Os12g0567800_circ_g.4 Os12g0567800_circ_g.5 Os12g0567800_circ_ag.6 Os12g0567800_circ_ag.7 Os12g0567800_circ_igg.1 Os12g0567800_circ_ag.2 Os12g0567800_circ_ag.3 Os12g0568100_circ_ig.1 Os12g0568200_circ_igg.1 Os12g0568500_circ_igg.1 Os12g0568166_circ_g.1 Os12g0568200_circ_ag.1 Os12g0568350_circ_g.1 Os12g0568350_circ_g.2 Os12g0568350_circ_g.3 Os12g0568350_circ_g.4 Os12g0568350_circ_g.5
Support reads	6880
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTG
GTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTTccgcagccaccgccgcatccgcaggaac
cgcagttacaacttccaccgcacgacatcttgatcttctgggtctcttgtaaactcttcaggaa
cttgtgta

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 512
Transcript exons: 23384050-23384241,23390567-23390799,23390906-23390992
CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT
GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC
CCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATGG
ACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTTG
GCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCA
CCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTTACCCCTTCTCAGGTGCAACACC
GAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 582
Transcript exons: 23384050-23384243,23390559-23390799,23390846-23390992
CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT
GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC
GGTTTTGACACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCA
CACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATA
GATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATG
GGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCTCAATCAGGAT
TTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGC
AACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTAC
ATCTTT
Transcript length: 608
Transcript exons: 23384050-23384243,23390566-23390799,23390813-23390992
CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT
GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC
GGACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGA
TGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATC
TTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCC
TCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTCCAAATTCAGCAAATAAGAG
TTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGA
TATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGT
TGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 611
Transcript exons: 23384050-23384274,23390567-23390799,23390840-23390992
CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT
GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC
GGAATTATGTCAAAGCATTATCTTGCCAGAAAGCCTGATTCGCACATGGTTGAGACAAACACAC
ACACACACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCT
GGTGCATTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAG
CTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCT
CAAAATGCCTCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTT
CGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGG
TGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 619
Transcript exons: 23384050-23384243,23390568-23390992
CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT
GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC
GGCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATG
GACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTT
GGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTC
ACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCAAAGAAACAAGCCAAATTCA
GCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAA
AGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGT
GATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Transcript length: 637
Transcript exons: 23384050-23384260,23390567-23390992
CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT
TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT
GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC
GGAATTATGTCAAAGCATTCCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCAT
GAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAAT
TCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCT
GCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCAA
AGAAACAAGCCAAATTCAGCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTG
GTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAG
GACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	TCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTG GTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTTccgcagccaccgccgcatccgcaggaac cgcagttacaacttccaccgcacgacatcttgatcttctgggtctcttgtaaactcttcaggaa cttgtgta
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 512 Transcript exons: 23384050-23384241,23390567-23390799,23390906-23390992 CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC CCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATGG ACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTTG GCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTCA CCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTTACCCCTTCTCAGGTGCAACACC GAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 582 Transcript exons: 23384050-23384243,23390559-23390799,23390846-23390992 CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC GGTTTTGACACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCA CACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATA GATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATG GGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCTCAATCAGGAT TTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGC AACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTAC ATCTTT Transcript length: 608 Transcript exons: 23384050-23384243,23390566-23390799,23390813-23390992 CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC GGACCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGA TGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATC TTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCC TCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTCCAAATTCAGCAAATAAGAG TTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTTCGA TATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGGTGT TGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 611 Transcript exons: 23384050-23384274,23390567-23390799,23390840-23390992 CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC GGAATTATGTCAAAGCATTATCTTGCCAGAAAGCCTGATTCGCACATGGTTGAGACAAACACAC ACACACACAGGCATGAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCT GGTGCATTGGCAATTCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAG CTGGAGCCACAGCTGCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCT CAAAATGCCTCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAAAGATTCTT CGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGTGATGGTGG TGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 619 Transcript exons: 23384050-23384243,23390568-23390992 CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC GGCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCATGAGCCATCACACTGGATG GACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAATTCAGTCATAGATCATCTT GGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCTGCAGCCATGGGCAGCCTC ACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCAAAGAAACAAGCCAAATTCA GCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTGGTTAGCTTTTCTGGGCAA AGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAGGACAGTGGTTGCAGTAGT GATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT Transcript length: 637 Transcript exons: 23384050-23384260,23390567-23390992 CCGCAGCCACCGCCGCATCCGCAGGAACCGCAGTTACAACTTCCACCGCACGACATCTTGATCT TCTGGGTCTCTTGTAAACTCTTCAGGAACTTGTGTAGTTGGATGAAATGAGAGATTGAAAGCTT GATATGAACTCAGTTCAGATATGCCCTCCTATTTATAGTAGTAGTACCCTTGAGAAGAAGCTGC GGAATTATGTCAAAGCATTCCTGATTCGCACATGGTTGAGACAAACACACACACACACAGGCAT GAGCCATCACACTGGATGGACTCTTTATTTATTCATCATGTAGACAGGCTGGTGCATTGGCAAT TCAGTCATAGATCATCTTGGCCTTAGCAGTTGCAGGGGTTGCACTTGCAGCTGGAGCCACAGCT GCAGCCATGGGCAGCCTCACCAGACTCACCTGCCTTGCCAACCATCACCTCAAAATGCCTGCAA AGAAACAAGCCAAATTCAGCAAATAAGAGTTTCAGGCATGAAGCTCAATCAGGATTTTCTTCTG GTTAGCTTTTCTGGGCAAAGATTCTTCGATATCATTCATACCCCTTCTCAGGTGCAACACCGAG GACAGTGGTTGCAGTAGTGATGGTGGTGTTGATCTTCTCAGCCAGGTCAGGGTACATCTTT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.559583232

Conservation Information
Conserved circRNAs	NA
PMCS	0.559583232

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR2919 osa-miR2919 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR2919 osa-miR2919
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os12g0568200_circ_ag.2

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