Detail information of Os01g0390400_circ_g.3


General Information
CircRNA Name Os01g0390400_circ_g.3
ID in PlantcircBase osa_circ_001793
Alias Os_ciR5767
Organism Oryza sativa
Position chr1: 16481014-16481231  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0390400
Parent gene annotation Similar to Met-10+ like family protein. (Os01t0390400-01);Nuclei
c acid-binding OB-fold domain containing protein. (Os01t0390400-
02);Nucleic acid-binding OB-fold domain containing protein. (Os0
1t0390400-03)
Parent gene strand +
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.1 Os01g0388500_circ_igg.2 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.1 Os01g0390300_circ_g.2 Os01g0390300_circ_g.3 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.7 Os01g0390400_circ_g.8 Os01g0390900_circ_g.1 Os01g0390900_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0390400-02:1
Os01t0390400-01:1
Os01t0390400-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCGGGAGGATCACGTGGAGAGGAGGTCCCACCCGGTTGCTGCTCCTGGACGAGAACTATGCC
AACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAGgcggcgaggctgcggctacggcaaggga
tactaaagacaaagtatatgtggtggaggtgatcggagagagaaaagaggagcacggcgacgag
tggatggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGGCGAGGCTGCGGCTACGGCAAGGGATACTAAAGACAAAGTATATGTGGTGGAGGTGATCGG
AGAGAGAAAAGAGGAGCACGGCGACGAGTGGATGGGGTTGGTCGGGGAGGAGGGGTTCGGGAGG
ATCACGTGGAGAGGAGGTCCCACCCGGTTGCTGCTCCTGGACGAGAACTATGCCAACAAGAGGG
TTGATGACCTCCCGGAGGCTGTCAAG
Conservation Information
Conserved circRNAs osi_circ_002067*
PMCS 0.306413524
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015