Detail information of Os01g0513900_circ_g.4


General Information
CircRNA Name Os01g0513900_circ_g.4
ID in PlantcircBase osa_circ_001927
Alias Os_ciR1299
Organism Oryza sativa
Position chr1: 18152219-18152777  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0513900
Parent gene annotation Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01)
Parent gene strand +
Alternative splicing Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.3 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.7 Os01g0513900_circ_g.8 Os01g0513900_circ_g.9 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.13 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18
Support reads 18/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0513900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCCTTCCAGACAAGGTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGAAGAGGGAGCTA
AGGATGTTGCTATGTCTGCATTGACAGGCATTAATGcttcgtgagaaggctgggttcttgctgt
tttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaagc
acccctgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 212
Transcript exons: 18152219-18152347,18152695-18152777
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
AGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGAAGAGGGAGCTAAGGATGTTGCTATGTC
TGCATTGACAGGCATTAATG

Transcript length: 232
Transcript exons: 18152219-18152392,18152720-18152777
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTGTGGTGTATGAAGAGGGA
GCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATG

Transcript length: 252
Transcript exons: 18152219-18152401,18152709-18152777
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGCCCAGACAG
AAGTGGTGTATGAAGAGGGAGCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATG

Transcript length: 405
Transcript exons: 18152219-18152533,18152688-18152777
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGACAAG
GTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGAAGAGGGAGCTAAGGATGTTGCTATGT
CTGCATTGACAGGCATTAATG

Genomic sequence CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGGTAGG
CTTTTCAGTGATCTATTCATGACTGCATATCTCAAGCAATTATGTTTGTAGTGACACTCTTGAT
CAATGACTTCATATCTCAATCCTATAAGTTTGAAGTTACCTCAGTAGCTAAATTGACTAATTTA
AATTCCATCTTACCCTTCCAGACAAGGTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGA
AGAGGGAGCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATG
Conservation Information
Conserved circRNAs osi_circ_009638
PMCS 0.554198413
Functional Information
Coding potential Y
Potential coding position 18152776-18152278(+)
18152288-18152223(+)
18152322-18152774(-)
Potential amino acid sequence MLREKAGFLLFSPDFKESAIY*(+)
MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALKDQVAWECDDNQT
ILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKDVAMSALTGINAS*(+)
MQGCLEVLIHPFSLVNCRFLEVWGKQQEPSLLTKH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017