Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0513900_circ_g.4 |
ID in PlantcircBase | osa_circ_001927 |
Alias | Os_ciR1299 |
Organism | Oryza sativa |
Position | chr1: 18152219-18152777 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os01g0513900 |
Parent gene annotation |
Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01) |
Parent gene strand | + |
Alternative splicing | Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.3 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.7 Os01g0513900_circ_g.8 Os01g0513900_circ_g.9 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.13 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18 |
Support reads | 18/2 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0513900-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009638 |
PMCS | 0.554198413 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18152776-18152278(+) 18152288-18152223(+) 18152322-18152774(-) |
Potential amino acid sequence |
MLREKAGFLLFSPDFKESAIY*(+) MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALKDQVAWECDDNQT ILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKDVAMSALTGINAS*(+) MQGCLEVLIHPFSLVNCRFLEVWGKQQEPSLLTKH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |