Detail information of Os01g0513900_circ_g.7


General Information
CircRNA Name Os01g0513900_circ_g.7
ID in PlantcircBase osa_circ_001930
Alias Os_ciR338
Organism Oryza sativa
Position chr1: 18152219-18153353  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ
Parent gene Os01g0513900
Parent gene annotation Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01)
Parent gene strand +
Alternative splicing Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.3 Os01g0513900_circ_g.4 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.8 Os01g0513900_circ_g.9 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.13 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18
Support reads 92/5
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0513900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGTTATGGTTTGACAGAAAGGAACAATTGTAGAAAAACTGGAAGAAGAAATTGCCAAGGATA
GCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGcttcgtgagaaggctgggttcttgctgt
tttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaagc
acccctgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 209
Transcript exons: 18152219-18152348,18153275-18153353
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACGGAACAATTGTAGAAAAACTGGAAGAAGAAATTGCCAAGGATAGCCAACATCTTAGGCATCT
AATCAGTATTTGTGAAG

Transcript length: 212
Transcript exons: 18152219-18152347,18153271-18153353
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
AGAAAGGAACAATTGTAGAAAAACTGGAAGAAGAAATTGCCAAGGATAGCCAACATCTTAGGCA
TCTAATCAGTATTTGTGAAG

Transcript length: 266
Transcript exons: 18152219-18152401,18153271-18153353
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGGAAAGGAAC
AATTGTAGAAAAACTGGAAGAAGAAATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGT
ATTTGTGAAG

Transcript length: 275
Transcript exons: 18152219-18152286,18152313-18152413,18152738-18152777,18
153288-18153353
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAACCCTGCATCAAAGATTGAGCGCACACCGATGTCGACCCCAACCCCTGGTGGCAGCACTAG
GGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGCGACGCTAAGGATGTTGCTATGTCTGC
ATTGACAGGCATTAATGAAAAACTGGAAGAAGAAATTGCCAAGGATAGCCAACATCTTAGGCAT
CTAATCAGTATTTGTGAAG

Transcript length: 299
Transcript exons: 18152219-18152392,18152720-18152777,18153287-18153353
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTGTGGTGTATGAAGAGGGA
GCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATGGAAAAACTGGAAGAAGAAATTGCC
AAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAG

Transcript length: 306
Transcript exons: 18152219-18152357,18152870-18152963,18153281-18153353
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATTCACCATGAGAGGCGTCA
CAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATATTGTAGAAAAACTGGAAGAAGA
AATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAG

Transcript length: 702
Transcript exons: 18152219-18152533,18152688-18152777,18152863-18152963,18
153065-18153178,18153272-18153353
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGACAAG
GTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGAAGAGGGAGCTAAGGATGTTGCTATGT
CTGCATTGACAGGCATTAATGCCACCATTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATT
CACCATGAGAGGCGTCACAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATACTCCT
GAGAGGGACTTTATCATCAAGATATCTGCTATGGAAATTTACAATGAGATTGTGAAGGATCTTC
TACGACCTGAGTCTACCAATCTTCGCTTGTTAGATGATCCTGAGAAAGGAACAATTGTAGAAAA
ACTGGAAGAAGAAATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAG

Genomic sequence CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGGTAGG
CTTTTCAGTGATCTATTCATGACTGCATATCTCAAGCAATTATGTTTGTAGTGACACTCTTGAT
CAATGACTTCATATCTCAATCCTATAAGTTTGAAGTTACCTCAGTAGCTAAATTGACTAATTTA
AATTCCATCTTACCCTTCCAGACAAGGTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGA
AGAGGGAGCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATGGTAAATTAATTCTCACT
CAGTAGTTTGAATAAAGTTGAATGATCCTTTATCTACTCTTTATTCTTTACCTTCCTTTGTTTT
GCAGCCACCATTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATTCACCATGAGAGGCGTCA
CAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATGTGAGTTTTTTTATACATGGAGC
AACAAAATCATGCTATCTATATTGCTTTCTAAAATGCACATAACACATAATTGTTTCTTGCTTT
TGTTGATTGCATAGACTCCTGAGAGGGACTTTATCATCAAGATATCTGCTATGGAAATTTACAA
TGAGATTGTGAAGGATCTTCTACGACCTGAGTCTACCAATCTTCGCTTGTTAGATGATCCTGAG
GTTTGTTTCCAGTTCGACAGAGTCTATGCACTGCCCCCACATATTCTCTTGCATGCCATGATTA
TCCTTTAATAAATTGTTATGGTTTGACAGAAAGGAACAATTGTAGAAAAACTGGAAGAAGAAAT
TGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAG
Conservation Information
Conserved circRNAs osi_circ_009641
PMCS 0.412233275
Functional Information
Coding potential Y
Potential coding position 18152288-18152223(+)
18152322-18153341(-)
Potential amino acid sequence MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALKDQVAWECDDNQT
ILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKDVAMSALTGINATIFAYGQTSSGKTFT
MRGVTESAVNDIYRHIENTPERDFIIKISAMEIYNEIVKDLLRPESTNLRLLDDPEKGTIVEKL
EEEIAKDSQHLRHLISICEAS*(+)
MQGCLEVLIHPFSLVNCRFLEVWGKQQEPSLLTKLHKY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to Pi-starvation
Other Information
References Ye et al., 2015;Chu et al., 2017