Detail information of Os01g0513900_circ_g.8


General Information
CircRNA Name Os01g0513900_circ_g.8
ID in PlantcircBase osa_circ_001931
Alias NA
Organism Oryza sativa
Position chr1: 18152219-18153550  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os01g0513900
Parent gene annotation Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01)
Parent gene strand +
Alternative splicing Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.3 Os01g0513900_circ_g.4 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.7 Os01g0513900_circ_g.9 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.13 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0513900-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTATTGCTTATGATGTCTTTATGACTGCAGAACAAAGACAGGTTGGGGAGACTGCACTAAAT
GACACCAGTTCACGTTCCCACCAGATCATTAGGCTGcttcgtgagaaggctgggttcttgctgt
tttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaagc
acccctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGGTAGG
CTTTTCAGTGATCTATTCATGACTGCATATCTCAAGCAATTATGTTTGTAGTGACACTCTTGAT
CAATGACTTCATATCTCAATCCTATAAGTTTGAAGTTACCTCAGTAGCTAAATTGACTAATTTA
AATTCCATCTTACCCTTCCAGACAAGGTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGA
AGAGGGAGCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATGGTAAATTAATTCTCACT
CAGTAGTTTGAATAAAGTTGAATGATCCTTTATCTACTCTTTATTCTTTACCTTCCTTTGTTTT
GCAGCCACCATTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATTCACCATGAGAGGCGTCA
CAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATGTGAGTTTTTTTATACATGGAGC
AACAAAATCATGCTATCTATATTGCTTTCTAAAATGCACATAACACATAATTGTTTCTTGCTTT
TGTTGATTGCATAGACTCCTGAGAGGGACTTTATCATCAAGATATCTGCTATGGAAATTTACAA
TGAGATTGTGAAGGATCTTCTACGACCTGAGTCTACCAATCTTCGCTTGTTAGATGATCCTGAG
GTTTGTTTCCAGTTCGACAGAGTCTATGCACTGCCCCCACATATTCTCTTGCATGCCATGATTA
TCCTTTAATAAATTGTTATGGTTTGACAGAAAGGAACAATTGTAGAAAAACTGGAAGAAGAAAT
TGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGGTAACTACTATCTGTAT
ATATTGTCTTAACTTATTTTTTCAAGAAGAACCAGAAGAAATGGGTTGCCTTATTTACTTTTTT
TTTTGTTGACGCGGTAGCCTATTGCTTATGATGTCTTTATGACTGCAGAACAAAGACAGGTTGG
GGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGCTG
Conservation Information
Conserved circRNAs osi_circ_009642
PMCS 0.394527084
Functional Information
Coding potential Y
Potential coding position 18153514-18152327(+)
18152288-18152278(+)
18152322-18153526(-)
Potential amino acid sequence MTPVHVPTRSLGCFVRRLGSCCFPQTSRNLQFTSENGCIKTSKHPCIKD*(+)
MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALKDQVAWECDDNQT
ILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKDVAMSALTGINATIFAYGQTSSGKTFT
MRGVTESAVNDIYRHIENTPERDFIIKISAMEIYNEIVKDLLRPESTNLRLLDDPEKGTIVEKL
EEEIAKDSQHLRHLISICEEQRQVGETALNDTSSRSHQIIRLLREKAGFLLFSPDFKESAIY*(
+)
MQGCLEVLIHPFSLVNCRFLEVWGKQQEPSLLTKQPNDLVGT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017