Detail information of Os01g0513900_circ_g.9


General Information
CircRNA Name Os01g0513900_circ_g.9
ID in PlantcircBase osa_circ_001932
Alias Os_ciR1720
Organism Oryza sativa
Position chr1: 18152219-18153697  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0513900
Parent gene annotation Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01)
Parent gene strand +
Alternative splicing Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.3 Os01g0513900_circ_g.4 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.7 Os01g0513900_circ_g.8 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.13 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18
Support reads 10/3
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0513900-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGTGAGAAAAATAATTATTGTGCATTATCTCTATCCAGACAGTTGAGAGTAGGCTCCGTGAA
GTGTCAGGATGTGTTAAATCTTTTGTGGCTAATCTGcttcgtgagaaggctgggttcttgctgt
tttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaagc
acccctgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 830
Transcript exons: 18152219-18152533,18152688-18152777,18152863-18152963,18
153065-18153178,18153272-18153353,18153483-18153550,1815
3638-18153697
CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGACAAG
GTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGAAGAGGGAGCTAAGGATGTTGCTATGT
CTGCATTGACAGGCATTAATGCCACCATTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATT
CACCATGAGAGGCGTCACAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATACTCCT
GAGAGGGACTTTATCATCAAGATATCTGCTATGGAAATTTACAATGAGATTGTGAAGGATCTTC
TACGACCTGAGTCTACCAATCTTCGCTTGTTAGATGATCCTGAGAAAGGAACAATTGTAGAAAA
ACTGGAAGAAGAAATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGAA
CAAAGACAGGTTGGGGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGC
TGACAGTTGAGAGTAGGCTCCGTGAAGTGTCAGGATGTGTTAAATCTTTTGTGGCTAATCTG

Genomic sequence CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGGTAGG
CTTTTCAGTGATCTATTCATGACTGCATATCTCAAGCAATTATGTTTGTAGTGACACTCTTGAT
CAATGACTTCATATCTCAATCCTATAAGTTTGAAGTTACCTCAGTAGCTAAATTGACTAATTTA
AATTCCATCTTACCCTTCCAGACAAGGTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGA
AGAGGGAGCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATGGTAAATTAATTCTCACT
CAGTAGTTTGAATAAAGTTGAATGATCCTTTATCTACTCTTTATTCTTTACCTTCCTTTGTTTT
GCAGCCACCATTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATTCACCATGAGAGGCGTCA
CAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATGTGAGTTTTTTTATACATGGAGC
AACAAAATCATGCTATCTATATTGCTTTCTAAAATGCACATAACACATAATTGTTTCTTGCTTT
TGTTGATTGCATAGACTCCTGAGAGGGACTTTATCATCAAGATATCTGCTATGGAAATTTACAA
TGAGATTGTGAAGGATCTTCTACGACCTGAGTCTACCAATCTTCGCTTGTTAGATGATCCTGAG
GTTTGTTTCCAGTTCGACAGAGTCTATGCACTGCCCCCACATATTCTCTTGCATGCCATGATTA
TCCTTTAATAAATTGTTATGGTTTGACAGAAAGGAACAATTGTAGAAAAACTGGAAGAAGAAAT
TGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGGTAACTACTATCTGTAT
ATATTGTCTTAACTTATTTTTTCAAGAAGAACCAGAAGAAATGGGTTGCCTTATTTACTTTTTT
TTTTGTTGACGCGGTAGCCTATTGCTTATGATGTCTTTATGACTGCAGAACAAAGACAGGTTGG
GGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGCTGGTATATATAAAA
ATAAGCCTCCATGTTTATGTTAGATCTTTTTCATGAAAGTGAGAAAAATAATTATTGTGCATTA
TCTCTATCCAGACAGTTGAGAGTAGGCTCCGTGAAGTGTCAGGATGTGTTAAATCTTTTGTGGC
TAATCTG
Conservation Information
Conserved circRNAs osi_circ_009643
PMCS 0.398738742
Functional Information
Coding potential Y
Potential coding position 18152288-18152278(+)
18152322-18153667(-)
Potential amino acid sequence MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALKDQVAWECDDNQT
ILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKDVAMSALTGINATIFAYGQTSSGKTFT
MRGVTESAVNDIYRHIENTPERDFIIKISAMEIYNEIVKDLLRPESTNLRLLDDPEKGTIVEKL
EEEIAKDSQHLRHLISICEEQRQVGETALNDTSSRSHQIIRLTVESRLREVSGCVKSFVANLLR
EKAGFLLFSPDFKESAIY*(+)
MQGCLEVLIHPFSLVNCRFLEVWGKQQEPSLLTKQISHKRFNTS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017