Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0513900_circ_g.13 |
ID in PlantcircBase | osa_circ_001936 |
Alias | Os_ciR2715 |
Organism | Oryza sativa |
Position | chr1: 18152219-18155135 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ |
Parent gene | Os01g0513900 |
Parent gene annotation |
Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01) |
Parent gene strand | + |
Alternative splicing | Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.3 Os01g0513900_circ_g.4 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.7 Os01g0513900_circ_g.8 Os01g0513900_circ_g.9 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18 |
Support reads | 4/3 |
Tissues | root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0513900-01:11 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009646 |
PMCS | 0.254345146 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18152288-18152278(+) 18152322-18155108(-) |
Potential amino acid sequence |
MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALKDQVAWECDDNQT ILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKDVAMSALTGINATIFAYGQTSSGKTFT MRGVTESAVNDIYRHIENTPERDFIIKISAMEIYNEIVKDLLRPESTNLRLLDDPEKGTIVEKL EEEIAKDSQHLRHLISICEEQRQVGETALNDTSSRSHQIIRLTVESRLREVSGCVKSFVANLNF VDLAGSERAAQTHAVGARLKEGCHINRSLLTLTTVIRKLSSDKRSGHIPYRDSKLTRILQLSLG GNARTAIICTMSPAQTHVEQSRNTLFFATCAKEVTNNAKVNMVVSDKQLVKHLQMEVARLEAEL RTPDRASSSEIIIMERDRKIRQMEKEMEELKKQRDNAQLKLEELQKKMGDNQPLREKAGFLLFS PDFKESAIY*(+) MQGCLEVLIHPFSLVNCRFLEVWGKQQEPSLLTKWLIITHLLL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |