Detail information of Os01g0513900_circ_g.13


General Information
CircRNA Name Os01g0513900_circ_g.13
ID in PlantcircBase osa_circ_001936
Alias Os_ciR2715
Organism Oryza sativa
Position chr1: 18152219-18155135  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ
Parent gene Os01g0513900
Parent gene annotation Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01)
Parent gene strand +
Alternative splicing Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.3 Os01g0513900_circ_g.4 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.7 Os01g0513900_circ_g.8 Os01g0513900_circ_g.9 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18
Support reads 4/3
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0513900-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGCAGATGGAAAAAGAAATGGAGGAACTCAAGAAGCAAAGAGACAATGCACAGTTGAAACTT
GAAGAATTACAGAAGAAGATGGGTGATAATCAGCCActtcgtgagaaggctgggttcttgctgt
tttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaagc
acccctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTAGC
GAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGTCG
ACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGTGC
GACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAACCA
GACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGGTAGG
CTTTTCAGTGATCTATTCATGACTGCATATCTCAAGCAATTATGTTTGTAGTGACACTCTTGAT
CAATGACTTCATATCTCAATCCTATAAGTTTGAAGTTACCTCAGTAGCTAAATTGACTAATTTA
AATTCCATCTTACCCTTCCAGACAAGGTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTATGA
AGAGGGAGCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATGGTAAATTAATTCTCACT
CAGTAGTTTGAATAAAGTTGAATGATCCTTTATCTACTCTTTATTCTTTACCTTCCTTTGTTTT
GCAGCCACCATTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATTCACCATGAGAGGCGTCA
CAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATGTGAGTTTTTTTATACATGGAGC
AACAAAATCATGCTATCTATATTGCTTTCTAAAATGCACATAACACATAATTGTTTCTTGCTTT
TGTTGATTGCATAGACTCCTGAGAGGGACTTTATCATCAAGATATCTGCTATGGAAATTTACAA
TGAGATTGTGAAGGATCTTCTACGACCTGAGTCTACCAATCTTCGCTTGTTAGATGATCCTGAG
GTTTGTTTCCAGTTCGACAGAGTCTATGCACTGCCCCCACATATTCTCTTGCATGCCATGATTA
TCCTTTAATAAATTGTTATGGTTTGACAGAAAGGAACAATTGTAGAAAAACTGGAAGAAGAAAT
TGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGGTAACTACTATCTGTAT
ATATTGTCTTAACTTATTTTTTCAAGAAGAACCAGAAGAAATGGGTTGCCTTATTTACTTTTTT
TTTTGTTGACGCGGTAGCCTATTGCTTATGATGTCTTTATGACTGCAGAACAAAGACAGGTTGG
GGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGCTGGTATATATAAAA
ATAAGCCTCCATGTTTATGTTAGATCTTTTTCATGAAAGTGAGAAAAATAATTATTGTGCATTA
TCTCTATCCAGACAGTTGAGAGTAGGCTCCGTGAAGTGTCAGGATGTGTTAAATCTTTTGTGGC
TAATCTGGTAAGCATAACGTCCTCATTTTGCAATGGTGTACATGCTGTTTTTTTAATCTCAATA
ATATGTGTTGCTTTTTCACAGAATTTTGTTGATCTTGCTGGAAGTGAACGAGCTGCACAAACAC
ATGCAGTTGGCGCAAGACTGAAAGAAGGCTGCCATATAAATCGCAGCTTACTGACTCTTACTAC
TGTCATCAGAAAGCTAAGGTATGATTTTCTAAAGAAAGAAAGAAAAAACTCTGGGTCTATTATC
TCTTATCTGCACCAATCTTGAAAGTAGTCGCTGAGTTACCTCGATGCACTCATGGGTTAGTCTC
AGTTCTAATGTTATCTGTTGATTTGTAATGATATCAGTATGTTAATGATGTATCTTATCTCCTA
ATGAATTTCTAAAACATGCTAATGAGATTCATCAGATCAAAATATTCCCAGGCCACTTTGTTTA
AGTGGGAGGCAATTGCTCTGTACTCTGTCCTATTGCCACTATACTGTTTAATCATTCTGCATAT
TTAGAACTAAAGTGAGTTTTATTAAAATCTCATAGCTGCAACACAGTTAATTGTAAGTTCTTGA
ATGTGTTGGCTAAGTGACATTGGTATGGCAGGACTAATAAGCAGCATTGTGTATTTGCAGTGTC
ATGAACATGTTAAACTAGACAATTTATTTGCAGTGTCATGAACACGTTAAACTAGATAATTTAT
TTGCAGTGTCATGCTAATACACAGTTTGAGACCTCTTTTCTACTTAGATAATTTACTGCATATT
TGTATTTTTACCGTTTCTTGGTTTGAACAGGAAACTATAATGAAGTATATCTTTATTGGGAATA
TTAGCAGACTGACTCTAAATTTTCAATGCAGCTCGGATAAAAGAAGTGGACACATACCCTATCG
AGACTCGAAGTTGACACGCATTCTCCAGCTTTCTTTGGGTGGAAATGCAAGAACAGCCATCATC
TGTACCATGAGTCCAGCGCAAACACATGTAGAACAATCTAGAAATACTCTATTCTTTGCAACCT
GTGCCAAGGAGGTTACGAATAATGCAAAAGTTAATATGGTAAGATCTGTGACTGTGATGCATCA
TTTATTTACTTATGAGAATGCAAATCTTCATCCCTTGGGCCTTGGTACGTACAGGTGGTATCAG
ATAAGCAATTGGTGAAGCACCTACAGATGGAAGTTGCTAGACTCGAAGCTGAGCTGAGAACCCC
TGATCGTGCCTCCTCTTCTGAGATCATTATAATGGAAAGGGACAGGAAGATTAGACAGGTAATG
TCTATGCTCAAGGATGAAGTTCACTGGAATCATTTCCATTTTGTAACTGACCTAATTAAGTGAA
CACTGCAGATGGAAAAAGAAATGGAGGAACTCAAGAAGCAAAGAGACAATGCACAGTTGAAACT
TGAAGAATTACAGAAGAAGATGGGTGATAATCAGCCA
Conservation Information
Conserved circRNAs osi_circ_009646
PMCS 0.254345146
Functional Information
Coding potential Y
Potential coding position 18152288-18152278(+)
18152322-18155108(-)
Potential amino acid sequence MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPLSKKELALKDQVAWECDDNQT
ILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKDVAMSALTGINATIFAYGQTSSGKTFT
MRGVTESAVNDIYRHIENTPERDFIIKISAMEIYNEIVKDLLRPESTNLRLLDDPEKGTIVEKL
EEEIAKDSQHLRHLISICEEQRQVGETALNDTSSRSHQIIRLTVESRLREVSGCVKSFVANLNF
VDLAGSERAAQTHAVGARLKEGCHINRSLLTLTTVIRKLSSDKRSGHIPYRDSKLTRILQLSLG
GNARTAIICTMSPAQTHVEQSRNTLFFATCAKEVTNNAKVNMVVSDKQLVKHLQMEVARLEAEL
RTPDRASSSEIIIMERDRKIRQMEKEMEELKKQRDNAQLKLEELQKKMGDNQPLREKAGFLLFS
PDFKESAIY*(+)
MQGCLEVLIHPFSLVNCRFLEVWGKQQEPSLLTKWLIITHLLL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017