Detail information of 4_circ_ag.12


General Information
CircRNA Name 4_circ_ag.12
ID in PlantcircBase ath_circ_033401
Alias NA
Organism Arabidpsis thaliana
Position chr4: 14247949-14252942  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.13 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 9
Tissues inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGTCCTTTTCTAGTCTTCCATGGCAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGAT
AAAATCTGTGAGAAGAAGATATCAACTCCCATTGAGgttctatgcaaaagccaccccgtggagt
ttgcttcatattttcattattgccacacactgacatttgatcaacgccctgattatggattctt
gaagcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATATTTTCATTATTGCCACACACTGACAT
TTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTCTCACGGGAAGG
TACTTTGAGAAAGACATCCCTCCATCATTTTTATAATCCTCTCTGCTAGCATCAGTTATCTACC
TAGCTCACTTAAACGTTTTCTTCTTTGCAGGATATGAGTTTGACTATATATATGACTGGACTAT
TATAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTCTCAGGTATAGTTTATCAATACCATT
TGTTATTTTTTTTTCTCCAGGTGTATGCATATTTTGTCTTGTTCATAGAGAAGATTTCCTGGGG
AGAAGTTTTACTTGGTTTTGCTATTTTTTAGTTTTGGTGCTAAATATAGATATGCCTGTCTTCC
TAACAATAAACTGTCATGCTGCAGGCCGTTCCTGGGTCTAGTAATGCTCGTGCAATACCAATGG
ACACAAGCAATCATCGAGGTCAGCTCGAGTTATAAATTTTAATTGTGTCACTTTCTGATTAATT
TTGTAATAGTATATGATGTGTTTTTTGTTTTCTCTCGACTTTCACACTGGACTCAACTGGCATA
GAGTGTTTGGCTGATTTAGTTTCCCGTTGCAACTGTTTATTTCAATATCTTGATGCTAACTCTC
CGTTTGGCAGGAGGAACTAAGATTTCACATGAAGCCCAAGTCTCTGACCGTGTCAGACCGGCTA
ATGCCAGTGGTCCAAGCCCACAGATTAATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGT
CCACAAGAATGTACGTGCTTATTCATTTGCCTCTTCCAAATAAATGTTGTATCCTGCAACCCTC
CCCCTTGTGTTAGCATCTCATGCCTGCATCTGTGTTGCTTCAGAGTTCTGCATGGTTCTCTGCT
TAAAGCTTTTACCTGTTTTGCATGGTCAATTGTCATCAACGAGCTCTATATTGTGATATGAACT
ACATATAGCATAAATGATTAAAACACGATACTGATCATCACGAAATATGCTCTTGACCATTATT
TTACTGAAAACCCATTGCAGATGAACATGCCATCATCCACTTCATTATCTCCTGCGGGTACCTC
AAAAAGAAATGTCAGACCCGAAACCTCAAATTCTGGGTTTGGGAGCGGGAATAAAACCGGCGGT
TGGACTTCACCATTCATGTCACCGGGGAAATGATGCAAAAAAAGTTGGAGTATATCATTCATCT
GATCTGCTGAGCAAGATTATGTGTGCCTTTGGGTCTAAACTGTGATTTCTGCAGTGAAAAGCTC
TAGACTGAGGTTGAAGATCTGAATGGAGTTTTTCCATGAACAGCTTACTGTTTGACAAAAGGCA
TGAAGATTATGTTTGCTTTCCTTCAAGATTCTCACAAATGACTGACTTCAACCTTTGTATAAAA
TCTTGCAACCGGGCGTGTAATTTGGTTCTTGTGATTCATTCTCCCAAGTTTTCTTCTATAAAAC
TTTGTTCGTATTTCTGTACGTAGTTCCCTGTGTTGGGGCATAACCTGGGTTTGCTGTGTCATCA
ACATTGTTTGCAGAAAATCAAGAGCAAAGCATGAGCAGCTTCAGCAGAGATGCCTTCAAAGGCT
TGAGTCAAGAGTTGCTTGTGGCAGGGACATGTCACCATCAAGCTAATGTGCAGCTGACGAGAAC
GTAAAAGGATAAGCTATGGCTAGCTTCTGGAATGCTCCGAGAAACACTTCCCCCTTTTTTTTTC
TCTGAATTTCCTATTCAGTTTAATGGTATTCTGTGTTTGATTTTTCTTACTCGATTTTGTGCAT
TGAAAAAAATTATATCAAAAAGCTTGACTTGATCCAAACATGCATTTTCAATTGCTATTATTAA
AAAAAAAAAACGTATAAAATTGTAGTCTCAATATTGAAATACAAACACCTAGAATTGATCGATT
TGGTAGAGAACTAGTTAGTGGATTAAATTTGGGTTGGCTGATTTTCGAGCCATAAACTATTTCG
ATTCTCAGCTTTCACACCCGGACTTTTGGGCCTTTAAATTTCCACCATCAACTTTCATATTCCC
AAAATTACATCATCTATTTTTGGATTCATGCTTAAACATACATTTCCAATTGAACCATTCATTT
AACCGGGATTAACCACAAATCCGCGTTTACTGTACCGCGATTGCGATTAACCCAACTAATACCC
AGACCCGTTAAGAAAACGACGTCGTTTTCATTTCGTTTAACTCATCAAAAAGAGAAAGAAAACG
ACGTCGTTTTCATTCTTCTTCTTTAACTCTCAAATCGATTTAGTCGTTCTTCTTTAATCTCGAC
ACTGTGAAATTAGGGTTCTTGAGAGAGAAAGACAAAAGGGGATTTGGGGTTTTCTTCTTCGGTT
CGAATTTTTGGGTCTCGATTTGGGTTTCGAATAGGGAGAAATGAAGAATTGGTGGGAGGAAAGA
TTGATTTACCAAAGCGATCCAGATGACCCCGATTTCGAACCTCCAGAGAGTGACATTGAAGCCG
ACGATGGAAGTGATAGTGGTGATAGCGGAGTCGAGGAGGACGAAGCCACCAGAATCGAGGGAGA
GGACGTCGGGATAGATGGAGACAGAGCTTCTGATGGAGAGGAAAATAGAGAAGACGATGGTGAC
ATAGCGTCTGATGGAGACGTCAATCTAGAAGACGATGGAGACAGAGATGAAAGTCAAAAGAAGA
GGACTACCAAATCGATTTGAGAGTTAAAGAAGAAGAATGAAAACGACGTCGTTTTCTTAACGGG
TCTGGGTATTAGTCGGGTTAATCACAATCGCGGTACAGTAAACGCGGATTTGTGGTTAATCCCG
GTTAAATGAATGGTTCAATTGAAAATGTATGTTTAATCATGAATTCGAAAGTAGATGATGTAAT
TTTGAGGAATATGAAAATTGATGGTGGAAATTTAAGGGCCCAAAAATCCGGGAGTGAAAACTAA
GAATCGAAATAGTTTATGACTCGAAAATCAGCCAACCCATTAAATTTTCGAACCTTCATCATTT
TGCAGACCCCAAAAACGGAAATCATCAAATCATCCACCGTGCCAGCGTGACATTACAAAATCAC
GTAAATACCCTCGTGTTTGTTTATAAGGTAAAAAAAGATTGGCGGACCCAAAATGGTGCAGTAG
TTAGGTGTACAAATTTTTTTTTGAAGGATCACTACTACGGCTCAAACAAGCCTGGGTCCATGTC
ACTACCACCGATGTCAGTCAAACAAAAATAATAATATATGTTTTTAAGTTCCTCTAATTTCAAT
CTTCTAAACAACAACCCTAAATCCTTATCTCTATCCTTGCGCTTGATCCAGATTCGGTTCTGAT
TGGAGCTGCCATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATCGGCGGTGGT
TCGTTCGGAGAGATTTTTCTAGGTTTTGTGTTCTCCTCTGTTCTTGTCCCTTTGGTTTTCCGAG
TTTGCTTTTTTATTTGAAATTGACGCTCTTCTCTTCTGTTTGTTGTTTTCGCAGCTACGCACGT
CGATACCTTCGAGATCGTAGCTGTTAAGATCGTAAGTCCCAGCTCAATTTGCCTTGAGACGAAT
TGAATCCATCCAATCTGGAGATTTGATTTGGATCTGCTATGTCTCTTAATTGATTTTGTTTGAA
TTGCTTTACTCTAAAATTGAGCAAGGTTTTAAACTCGGTGCTTTTTAGCTGCAATATATTCTTC
AAGCTAACACTTGTTTTTAATTCAATCATTTTCTCTTGCAGGAGAACAGTAAAACAAAGCATCC
TCAACTTCTCTATGAAGCTAAGCTATATAGAATTCTTGAAGGAGGAAGTATGATTCTCTTTCCT
CTCTTTTCTCAGTTGTTGGACATTGGAGGGATTCATTAGCAGTACAATACTAATTTTTATGTTA
TGTGTCAGGTGGAATTCCGCGCATAAAATGGTTTGGAGTTGATGGAACAGAGAATGCTTTAGTG
ATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGGAAATTCTCACCAA
AGACAGTCTTGATGTTGGCTGATCAAATGGTATGGCATGACTTTCAACTATTCATTAGGCTATT
TATAATATCTGTTGACTTATACATTGATTATCTAATGTGCTTCCGATTTTCTTATCCCGCTGTT
ACAGCTAACAAGAATAGAATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGAT
AACTTCCTCATGGGCCTAGGTCGGAAAGCAAATCAGGTATATTTCTGCAACTTCTTATCTTCAT
CAGATGCCATAAGTAGAGTATGGTATGATTGATAAGTCTCATTTTTCAGGTTTATCTAATTGAC
TTTGGACTTGCCAAAAGATATCGGGATGCCAACACCAACCGCCACATCCCTTACAGGTATTGTG
GCCTTGGTTCAATATACAGATTGTAAATGATCTATCTGTTTTTAAGTTTTACGGTCACGTTAAT
CATTATACAACTTATTTCCTTTATTCGGCTATATTCAGGGAAAACAAGAATTTAACAGGAACTG
CACGATATGCAAGTTGCAATACACATCTTGGAATTGGTAAGAAATGCTGGCATTCTTTATCCTT
ATGTAAAAGTAAATCGCTTTTGCTCATATTTTGGGTTCTCTTCACAGAGCAAAGTCGACGGGAT
GATCTAGAATCGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGGTGTGTTGTCTTTTTGA
AAGAAACTAGTTAACATTATGTTATTTCGCAGGGTATTTCTATTCCTTGTTTTTAGAGATTTAC
TTAACTGTTTTTTGTGTTCCTCATTTCATGAACGTCCTTTTCTAGTCTTCCATGGCAGGGTCTT
AAGGCTGTTGACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGATATCAACTCCCATTG
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.490877643
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017