Detail information of BGIOSGA033301_circ_ag.14


General Information
CircRNA Name BGIOSGA033301_circ_ag.14
ID in PlantcircBase osi_circ_008632
Alias Chr10:22132886_22137568(MH63RS2), Chr10:22132886_22137568(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19255874-19260557  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033301_circ_g.1 BGIOSGA033301_circ_ag.1 BGIOSGA033301_circ_g.2 BGIOSGA033301_circ_g.3 BGIOSGA033301_circ_ag.4 BGIOSGA033301_circ_g.5 BGIOSGA033301_circ_ag.6 BGIOSGA033301_circ_g.7 BGIOSGA033301_circ_ag.8 BGIOSGA033301_circ_g.9 BGIOSGA033301_circ_ag.10 BGIOSGA033301_circ_g.11 BGIOSGA033301_circ_g.12 BGIOSGA033301_circ_ag.13 BGIOSGA033301_circ_ag.15 BGIOSGA033301_circ_ag.16 BGIOSGA033301_circ_ag.17
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGTGATTTATGATACAGGAGACCTCAAGGAAAGTTTCTATATTGGGCCCATTGGAGATGAAG
GTTTGCAGAATGATGCTAACCAGTGGCCTTCTGAAGgagcgcctgccatgttggaaggagacaa
tgaaactgtaccgtgcaactgcactgtaagttttcatattgctggtctcagtgaaggaaattca
ataattat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCGCCTGCCATGTTGGAAGGAGACAATGAAACTGTACCGTGCAACTGCACTGTAAGTTTTCA
TATTGCTGGTCTCAGTGAAGGAAATTCAATAATTATATTACTATCGACAGCCATCCGTCCATCA
CTGATTCGCCGCATCAGTATTGTGTTTGTGTAATACTTCTATATGACTGTTCCATTCATGATTT
GAATATTCCCACTTATTTGCTACTACTTCCAGGGCTACTGGCAAACGGATACTCTCTCTAGTTG
CTCTGAGTTTGAATCTAGACGCTGAATTCTTTGACTGCCCGTTGGCATTTCTTCGATTGTTGCA
CTACCCAGGTTATCTTATTGCATGTCCCTTTCTCATATGAAGTTAACCAAAGTTGTGGAGTAAT
GATATGCAGTGGACTGCTATGTACATGCTTGATATTGTCCTTATCTCGCTTCTTGCCATGTCAG
AATGCAGATTGATGCTTGGATTTGTTCTCTTGCACTGATTTGTTCAACAAATTTCTTTCTTTGA
ACAGAATGCTGTATGTCATTCTAAAGGATGAAGAACATGGTATCCTCCTATTGATGTAGCTTTA
TTGGGTTGGCCCTTGGGAACATTACAAACATGTCAAGTAAATTATAATGAAAAAGTCATAGTGC
TACTTGCATGGTCTCAATTGCAATTTTTACTAAAACTTCGTTTAATATCTCACTTGTTAACTTG
CACTAGTAGCTGACAGAGTAGATCTGCGTGATAGAAATTGCTAATAGTTCAAACTAATTTATCT
TGATGCTGACCTACTGTATACTGGAGCGTAATGATAAATATGTTCTTGTAAATCAATGAGCCTA
AGTTATGGAGGTTCCTAAGGTAGCTTTGTTTTCTGCATTGTTTTGCTTGCTACTGCCATACTGG
AAAGCAGGATATGAACTGAAAATATCATGAAACTTCAACCTGCTTCTAGGAACTTTTGTTTTGG
AGGACTGACTTTGTTTCATTGTTATTGTGTTTTCCTCCTTACATAGTAGTTATTGGTTTTGTCT
GAATAGAAAATAATTCTAAATGTAGGTGAAATCAACGAGTCCGATGATGGCAACTATGGAGCAT
CAGCTCACTCAGATTATGGAATACTAACCCTTCTAGCAACAGATGGCATTCCTGGGCTGCAGGT
ACACCATGTTCTTCACATATATTAATTCACCAATTTCAATTCTGTTCTCTTTTCCAGCTAATCA
ATCATGTAGACAAATACATGCTCAGAAGGTTTGGTGAGAATGGGGTTATGTGATCACCTTTTAC
CACTTTCAAGCAAAACAATACTTTCCTGTTTAGAAAAGCAGAAAAATAATATGTATTCTTTATT
TTTGCATTTATATTCTAGTTTTCTCACTGTTGTGCATTTGCAGATATGCAAGGAGAAGGATAGG
CATCCCCAGCTCTGGGAAGATGTTCATCACATCGATGGGTAAATAGTAAAATACTTTTTGGTGA
TATTAATGAATAACAATTCCAAATATACTGTTGCTTTGCTCTTAGCTCTCTGGATCACTGTCTT
GTGTGCTCCTTAGATAACCAGGTCTTGTGTACAGGGCTCTGATTATTAACATTGGCGATTTGCT
AGAAAGGTGGACAAACTGTGTTTTCAGGTACCATCCTTTTGTACTTCAATTGATCCATTATGTG
GTTGTGACGAAGCCTCATGTGCTGTGGTCACTGTTACGAAAGTTCAAATAAACCAGCTACAGTT
GTGAGTAGTTTCACCAAAAACTTTCTGTTTTTTTGCAACTTGATATGGTTAAATATGCTTGAAA
GCACAATGCTTTCTAAGTTGGTTTAGGCTTGTCAATATCATGAGCAGGATAGATCATGTCCATG
TTGTTTCTGAAATTCTACAGGTCTTTTTGAGTTCTGAAATTTAAGGAAAAAGCCTTGTGTATGA
ATTTTAATTATTCTTGCTCTTTTGCTGACTTGTAGGTCTACACTGCATCGTGTTGTGGCAGTTG
GTAAAGAGCGATACTCTGTGAGTATTACTAACCACTGAAATTAGAATTTCATTATTGAGGGGTT
TCAGCTCATTGAATTATTGTTATTTTTTGTGGAAGTTCCCATTGAATTCATGTTCTAGAGCTGG
ATGAACCCCGCTTTAAGGGAAAACTAATACTGATAATATATAGCACTTCAGTGACTAAATTGTG
TGCTTAACTTCAGGACCTTTCTGGTGGACATTCTTTCTTACGCAAGTGCTTTTTTTTTTTTTTT
TTCAATTTGTCAGGTGGCTTTCTTTCTTGACCCAGACCCTGATTTTGTGGTTCAGTGCTTGGAA
AGCTGTTGTAGTGAGGCATGCCCACCAAGGTCCTCTTCTTTCTCAATCTTAGCATTAGTCTAGT
TCCTTTGGCACTTGCTTCTCATATTGTTTGAAATTTAATGCATTTTCAGGTTTCCACCTATAAA
AAGTGGCGACTATTTGGAAGAGCGCTTGAGCTCAATATACAAAAAGGAAAAACTTGCTACATGA
CACCTAAAGTTTGTGGTTTTAGCCGCAGGTCACTCAAAGAACGTGTAATTGCTAAAGGACATTG
CAAACACATGTTAATTATCTGCTGGACACCGAACACACTATTTTATTATATCCGATGTAAATGG
AGGGAGAAACAGTGATGAAAGTACACATTTACCCTTGTGTTGGTAAGGCGCGTCTAGTTCGAAG
CAGCCGATGTAATTCTTAATGCTGCTGCCCCAGCAGTAGCTTAACTATAATGCAGCTAATTACG
TACTTCCTCCGTTCCACAATGTAAGACTTTCTAGTATTGCCCATATATTCATATAGTGGGCAAA
CTAGCCTCATGGGTTAAAATCCTATCTTCTCAATCTTAGCATTAGTCTAGTTCCTTTGGCACTT
GCTTCTCATATTGTTTGAAATTTGATGCATTTTCAGGTTCCCACCTATAAAAAGTGGCGACTAT
TTGGAAGAGCGCTTGAGCTCTACATACAAATAATCCTACATTTTTACATGTGTAAAGCTTAAAC
TTGATAACTGGCTCCCATTAATTGGCTGCTATAAAGTGCTAAATGACCCTGTTTTTGCAGTTGT
TTGAGCTAGCCGTGGAGCTTCCCCGGACCTCAGCTCCTTTCCTTTGACACTTGGTAGTCTTCAT
TAAAAAAAAGAAGAATGTGAACTGGATGTACAGTTCTTTTCCCAAAAACACGCAAGAAAACTGA
ACATGTTGAAGCAATGGATCTTAGACTGTTCTGGGAGCTGCAAGCATCTGGGCTCTGGCCTTTC
AACTGAACCAGCTTCATGCAGATCATGAACAGTTTGATGACATATCTGAAATTTCTGTCTCAAA
TTCATCTAGAAAAAAAATGATAAAATGATATGCAGCCGATCTATGATAGAGCAGCCGGATTATT
TTCAGGTGAATTGCCTGTAGTTTGTCTTGCATAGTCGGCCTCGTTCAATTCATAATAGGCTTAT
AATGGGCCTTTCTTTGTACGTGATGGGATACTAGGCCATTAGTGGGCCTAAGTTTCTCTCTGCT
GGGCTATTCTCTTGTTGTAAATGGGCCCCAAATCTTTGAGTAATGGGCCGTTCGTGGTCCCGTT
TTACCGTAGATGGGCCATGTTTGCTTCCTCCTCTGTAAACCCAGTTACCGTGGGGACGCGGACG
CGGACGGCGGCGGCGGCAGCAGCAGCAAACCGCCGCTTCGGCAGAAGAGGAATCCGGCGATGGC
CGGCGGCGGCGGCGGCGGGAATCGCCTGGACCTCCCCGTGGTGGACCTCGCGTCCTCCGACCCC
CGAGCCGCCGCCGAGTCCATCCGAAAGGTACCCAATCCATTCCGGATTCCATGGCAATTTTCCT
GGAAACAATCTGTTCCGTGGGCGCGGCGGCGGCGGAGAGAGAGAGAACAGGGCGTGATTCGTGT
GGGGGTGGTTTGGTTTTGCAGGCGTGCGTGGAGTCCGGATTCTTCTACGTGGTCAACCATGGGG
TGGAGGAGGGGTTGCTGAAGCGGTTGTTCGCGGAGAGCTCGAAGTTCTTCGAGCTGCCGATGGA
GGAGAAGATGGCGCTGCGGAGGAACAGCAACCACCGGGGATACACCCCACCCTACGCCGAGAAG
CTCGATCCCTCGTCCAAATTCGAAGGTCTGCGCCTCCTGTTTTGCTCTGCTCGCCGTGTTAAAC
TGCTAATTGTTAAACCTAAGCATCCTCTCCTTTTTTAAGACTGTTGATAAATTTAATCCTGAAG
TGTATGGGATAACACTGGCAAGTTAGTATAATAGTAGCACATGACAGAGCTGGAGTGACCCTTT
TGTCGGCAAAAATCAGAAGTTGACATGTTAGTGCCTGATTATGGAATATTCTTTATTAGCAGTA
TAAGCAAATTAAAAATGTCCCGATGTTTGTGAAAGATGCTTTTGAAAACTGAACTAGAAACCAT
GGTTCTGGTTTGATCTATCTGAACATCTCACAATCTTCAATAAGTACAAGGTGCATGGAGTAAT
AACTAATAAGTACAAGTGCTCACTGCCTATACTTTGAACAATCACTAGATTTTGTGGATTTTAC
CTTCTGGTGTTTGTAGTGATGTACTTATTTAAGATCTGTAACTGTGATTTATGATACAGGAGAC
CTCAAGGAAAGTTTCTATATTGGGCCCATTGGAGATGAAGGTTTGCAGAATGATGCTAACCAGT
GGCCTTCTGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021