Detail information of BGIOSGA015140_circ_g.2


General Information
CircRNA Name BGIOSGA015140_circ_g.2
ID in PlantcircBase osi_circ_005447
Alias 4:18024567|18025578
Organism Oryza sativa ssp. indica
Position chr4: 18024567-18025578  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015140
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015140_circ_g.1 BGIOSGA015140_circ_g.3 BGIOSGA015140_circ_g.4 BGIOSGA015140_circ_g.5 BGIOSGA015140_circ_g.6 BGIOSGA015140_circ_g.7 BGIOSGA015140_circ_g.8 BGIOSGA015140_circ_g.9 BGIOSGA015140_circ_g.10 BGIOSGA015140_circ_g.11 BGIOSGA015140_circ_g.12
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA015140-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGCCCATGAATTAGATCGTTCACCAGCATCAAGTAAACTACTGCATCAACATCAGTAGCAAA
TCCAAAATATTCGCCATAGTTGCCAGTAAATGCCACcttatccatcaaccagaatgcaatagtc
ttgtcaccaactagtgcttggtcatgactttctgcataagtaacacacttctctgaccaccttc
tattcgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATCCATCAACCAGAATGCAATAGTCTTGTCACCAACTAGTGCTTGGTCATGACTTTCTGCA
TAAGTAACACACTTCTCTGACCACCTTCTATTCGTTAGGGTGTGCACGATATCACCCATTTTCC
AATATTCGTCACTTTGCCTGCATTAAAGAAAGTTGGAATTTCATGACAACATATTTGGAAGTTG
GAACCTACCCAGAACATACATTAATACTAGCTCTCAGTAACTCATAAAAAATATGATTAAAAAG
TGTAAAAGCAGCTCTTCAAAGGGCATAGCAGCAGTACCAAGATGGAGCACTAGACCACTAACAT
GGCACTATAAAAAGGAGAGCATAACTCAATGATATCCAGTAAGTTAGTTGAATGTCTCAATTTT
CAGATGTACAATCACCGAAGTTCCAGTACTTACTTGAGGAGTTCGATCCATTTGTCCGGTACAG
CCATATGCAAACGATAGTCAAAACCAACACCACCATCTTGAACAGGAATACAAAATGTGGGCAT
CCCGCTGACCTGAACAGAAAGCAGGGATGTAAGTTCAACCATGTTGCTCTCACAAATAGTTTAT
AGCATAATTAAATATATATTTGGTATCATATGCTAGCCCCATTTTGCATTGTGCAACTTAAATA
AATCAAATTACATTTTCTCATTTAATGAAGAATAGAAAAGAATGCTGTTGAGAAACTATAACCA
TCAAGGAACATGCCTGTTAGTTCTTCCAATGCCCTTAAACTTTATCAATTGGGGACAAATATAT
TATATTTTATATCTGGTTGGGAATAGATACTAACCGCTTTCACCCAACTAAAACTAATTAATTG
GTTTGTGTGAAGTATCAATATGACAGAAAAGCAGATACCATAAGCACTTACATCTTCACCAATG
GCTACAGCCTCAGGATAAAGCCCATGAATTAGATCGTTCACCAGCATCAAGTAAACTACTGCAT
CAACATCAGTAGCAAATCCAAAATATTCGCCATAGTTGCCAGTAAATGCCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 18025511-18024569(-)
Potential amino acid sequence MLVNDLIHGLYPEAVAIGEDVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWIELLKQSDEYWKMG
DIVHTLTNRRWSEKCVTYAESHDQALVGDKTIAFWLMDKVAFTGNYGEYFGFATDVDAVVYLML
VNDLIHGLYPEAVAIGEDVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWIELLKQSDEYWKMGDI
VHTLTNRRWSEKCVTYAESHDQALVGDKTIAFWLMDKVAFTGNYGEYFGFATDVDAVVYLMLVN
DLIHGLYPEAVAIGEDVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWIELLKQSDEYWKMGDIVH
TLTNRRWSEKCVTYAESHDQALVGDKTIAFWLMDKVAFTGNYGEYFGFATDVDAVVYLMLVNDL
IHGLYPEAVAIGEDVSGMPTFCIPVQDGGVGFDYRLHMAVPDKWIELLKQSDEYWKMGDIVHTL
TNRRWSEKCVTYAESHDQALVGDKTIAFWLMDK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021