Detail information of Os01g0513900_circ_g.3


General Information
CircRNA Name Os01g0513900_circ_g.3
ID in PlantcircBase osa_circ_001926
Alias NA
Organism Oryza sativa
Position chr1: 18152217-18153898  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os01g0513900
Parent gene annotation Similar to Kinesin heavy chain (Fragment). (Os01t0513900-01)
Parent gene strand +
Alternative splicing Os01g0513900_circ_g.1 Os01g0513900_circ_g.2 Os01g0513900_circ_g.4 Os01g0513900_circ_g.5 Os01g0513900_circ_g.6 Os01g0513900_circ_g.7 Os01g0513900_circ_g.8 Os01g0513900_circ_g.9 Os01g0513900_circ_g.10 Os01g0513900_circ_g.11 Os01g0513900_circ_g.12 Os01g0513900_circ_g.13 Os01g0513900_circ_g.14 Os01g0513900_circ_g.15 Os01g0513900_circ_g.16 Os01g0513900_circ_g.17 Os01g0513900_circ_g.18
Support reads 2
Tissues shoot, seed
Exon boundary   No-No
Splicing signals   AG-CC
Number of exons covered Os01t0513900-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACGAGCTGCACAAACACATGCAGTTGGCGCAAGACTGAAAGAAGGCTGCCATATAAATCGC
AGCTTACTGACTCTTACTACTGTCATCAGAAAGCTAagcttcgtgagaaggctgggttcttgct
gttttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaa
gcacccct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCTTCGTGAGAAGGCTGGGTTCTTGCTGTTTTCCCCAGACTTCAAGGAATCTGCAATTTACTA
GCGAAAATGGGTGTATCAAGACCTCCAAGCACCCCTGCATCAAAGATTGAGCGCACACCGATGT
CGACCCCAACCCCTGGTGGCAGCACTAGGGTCAAGGAGGAGAAGATTTTTGTCACAGTGAGGGT
GCGACCATTGAGCAAGAAAGAACTGGCCTTGAAGGATCAGGTGGCATGGGAGTGCGATGATAAC
CAGACAATTTTGTACAAGGGCCCCCCACAGGATCGGGCTGCACCCACCTCTTACACTTTCGGTA
GGCTTTTCAGTGATCTATTCATGACTGCATATCTCAAGCAATTATGTTTGTAGTGACACTCTTG
ATCAATGACTTCATATCTCAATCCTATAAGTTTGAAGTTACCTCAGTAGCTAAATTGACTAATT
TAAATTCCATCTTACCCTTCCAGACAAGGTGTTTGGACCAGCTTCCCAGACAGAAGTGGTGTAT
GAAGAGGGAGCTAAGGATGTTGCTATGTCTGCATTGACAGGCATTAATGGTAAATTAATTCTCA
CTCAGTAGTTTGAATAAAGTTGAATGATCCTTTATCTACTCTTTATTCTTTACCTTCCTTTGTT
TTGCAGCCACCATTTTTGCCTATGGTCAAACCAGCAGTGGTAAGACATTCACCATGAGAGGCGT
CACAGAGAGTGCTGTAAATGATATATACAGGCACATAGAAAATGTGAGTTTTTTTATACATGGA
GCAACAAAATCATGCTATCTATATTGCTTTCTAAAATGCACATAACACATAATTGTTTCTTGCT
TTTGTTGATTGCATAGACTCCTGAGAGGGACTTTATCATCAAGATATCTGCTATGGAAATTTAC
AATGAGATTGTGAAGGATCTTCTACGACCTGAGTCTACCAATCTTCGCTTGTTAGATGATCCTG
AGGTTTGTTTCCAGTTCGACAGAGTCTATGCACTGCCCCCACATATTCTCTTGCATGCCATGAT
TATCCTTTAATAAATTGTTATGGTTTGACAGAAAGGAACAATTGTAGAAAAACTGGAAGAAGAA
ATTGCCAAGGATAGCCAACATCTTAGGCATCTAATCAGTATTTGTGAAGGTAACTACTATCTGT
ATATATTGTCTTAACTTATTTTTTCAAGAAGAACCAGAAGAAATGGGTTGCCTTATTTACTTTT
TTTTTTGTTGACGCGGTAGCCTATTGCTTATGATGTCTTTATGACTGCAGAACAAAGACAGGTT
GGGGAGACTGCACTAAATGACACCAGTTCACGTTCCCACCAGATCATTAGGCTGGTATATATAA
AAATAAGCCTCCATGTTTATGTTAGATCTTTTTCATGAAAGTGAGAAAAATAATTATTGTGCAT
TATCTCTATCCAGACAGTTGAGAGTAGGCTCCGTGAAGTGTCAGGATGTGTTAAATCTTTTGTG
GCTAATCTGGTAAGCATAACGTCCTCATTTTGCAATGGTGTACATGCTGTTTTTTTAATCTCAA
TAATATGTGTTGCTTTTTCACAGAATTTTGTTGATCTTGCTGGAAGTGAACGAGCTGCACAAAC
ACATGCAGTTGGCGCAAGACTGAAAGAAGGCTGCCATATAAATCGCAGCTTACTGACTCTTACT
ACTGTCATCAGAAAGCTA
Conservation Information
Conserved circRNAs osi_circ_009644
PMCS 0.616549278
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017