Detail information of BGIOSGA003571_circ_g.1


General Information
CircRNA Name BGIOSGA003571_circ_g.1
ID in PlantcircBase osi_circ_009501
Alias Chr01:16612751_16614906(MH63RS2), Chr01:16637255_16639410(ZS97RS2), Chr01:16612751_16614906(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 17823349-17825504  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA003571
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA003571_circ_igg.1 BGIOSGA003571_circ_igg.2 BGIOSGA003571_circ_igg.3 BGIOSGA003571_circ_igg.4 BGIOSGA003571_circ_igg.5 BGIOSGA003571_circ_g.2 BGIOSGA003571_circ_g.3 BGIOSGA003571_circ_g.4 BGIOSGA003571_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA003571-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTGTTACG
TACACTAATTCGTTGCTATTTTTCCCCAATACACAGgcaagttcacgaaggcttggagttctct
aatgatgatgatgggttctcctttgccatattttctgttaagttttcaaaagatggccgagaac
ttgttgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAAGTTCACGAAGGCTTGGAGTTCTCTAATGATGATGATGGGTTCTCCTTTGCCATATTTTCT
GTTAAGTTTTCAAAAGATGGCCGAGAACTTGTTGTTGGAAACAACAATGAATCAATATGTATTT
ACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCGGTATGAAACAGATGCAT
GACTGAGCTACATGCTTTTATTGTCAATGTATGACTGTTTTCTGTCCCACCAATTGATATCTGC
ACATTATCTTTTCTTCCGTGCATCATTACCATTTTGAACAAGTGGTATTTACAATGTAATTAGA
ATAACACCGTTTGTTTCTTTCTTAGATAACTTGACAAGATTAGGTTCTTAGTGTAGCTTGATGC
GTCACACTAACACAGTATATACATATGGGAGGAATTTAAGACAAAAGGGATTGTAGGTCAAGGT
CACTAACAAAGGTTTCTGCCATTTTATTCTGAAGAATGATGATATATTTAGGAAGCTTTGATCC
AACAAAACTGGAAATTTGCACAAAAGAATCAAAATTTGCATGTTTATCAAATCATCTGGTGTAC
TAAAAATTCTCATTCTGGGTATAATAGACAAGTTAATGAACATGCTTCAGCAGGCAAAAATATC
ATCAGCTAGGAGCAGATGTCTTGCTAAAATTTATTTTTGTCACAAATGCCATAAATGTGGAGTT
ATTGAAGCAGTAGAGTTAGGCACTGCATCAATTCCTGCCAGTTTCCTGAAAGTAGTAGTGGACT
CAGCCCAGTATGTTCGAAACATATACTGACATAAACAACTAGAAATATGAAATCAAACATTTCA
GGGATGTTGAGTGAACTTGAAAACTTGCCCTTGTCCAGAAACCACCTTGATAGTGAGATCTCAA
ACAGTAGATGGGACTATCTGTAACATGACAATGTAACGTATGTGCTACATTTTATATTGTTGGA
TTAACTTAGGTTTGGAACCTTTCTTGATAATATATTTTTCATTTCTCTTTTGTGGTAGCCATTG
TATTAGAAAAAAAAAGTTATGTTTCTTACTGAATCTTATTTTCTCAACTTTTGGTCTTTAAAGG
CTGATGTCAACGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGA
TAGCCTCTGTAAGGTGAGACTAATATTTCCCAATTTCATTTACTCTTTCTTTAAAGATGATTCT
ATTTGCATTTGCTGGTTTAAGTCAGACAGCAACATTGCAGGTTTATCTGGCTGATCGTGCCAGA
AGTCCAGCAGTGCTTGAATATTTGGTGTAAATACACTGTCTACACTAAGTCACTAACTCACTAA
CCAATATGAAACATGAGCAATGAGTTCAGCCTCTAGAGGACCGATTTGTGTAGCCGCTAGAGGA
ACCATTGTTCAGTAGTGCAAACTCTAACACCAGTCTGTTTGGTATTAATGCATGATCAGTCTTT
TTGCTTGCCTAGGAGATGTGAAATCTGTGAAGGGCTTCCTATCATATCGAAGTTCTGATAAGTC
ACCCATGGAGGCTTTCTTTGACTGACACTGTTATCCAATCTTCAGGTCTGGGATAGGCGCTGCA
ACAAGAGAGGAAAACAAGTTGGTGTTTTGACAGGTCATTTAGATGGGATTACATTTATTGATAG
CCGTGGAGATGGGCATTATTTTATTTCAAATTGCAAGGATCAAACTATTAAACTATGGGACATC
AGGAAAATGTCGTCCACTGTGAAAGAGTAAATACAGCTCTTGCTTTTGCATGATTATTCCTCTA
AACCAAACCACTTTTTATGCTTGAATCTTAAACGCAACATATTGTAAGCAAGTAGGAAATGCTA
AAATCAAAATCTGCCTTTGACTAGATCTGCTTGGCCTGATTTGTCCAAGATCTTGTCTACATGC
CTGACCCAAAGTCCAAAATATAAAATAGGCTAAAGTTATTCGACAGAAATACTATTTTTACTTG
TAGTTTGTTTTTGCAGCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCC
CTCAGAAGCCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCA
GTGTTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAG
Conservation Information
Conserved circRNAs osa_circ_001769
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021