Detail information of BGIOSGA003571_circ_igg.1


General Information
CircRNA Name BGIOSGA003571_circ_igg.1
ID in PlantcircBase osi_circ_009498
Alias Chr01:16610075_16611784(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 17820673-17822382  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003571_circ_igg.2 BGIOSGA003571_circ_igg.3 BGIOSGA003571_circ_igg.4 BGIOSGA003571_circ_igg.5 BGIOSGA003571_circ_g.1 BGIOSGA003571_circ_g.2 BGIOSGA003571_circ_g.3 BGIOSGA003571_circ_g.4 BGIOSGA003571_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGTTACTTGTTCTTTTTGCAGGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATC
CAGAATGGCATGAGAGAATCACATGCCAATATTACGgtatccaaacatgggctggaaaaggaag
acacatcatggaggatcatgtcatcaacaacaatcctgtccttcacatggtaatgaattgtctg
cgatagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCCAAACATGGGCTGGAAAAGGAAGACACATCATGGAGGATCATGTCATCAACAACAATCC
TGTCCTTCACATGGTAATGAATTGTCTGCGATAGATGAGGAGGTTTCCCATCTTACGAGGCTTA
AATCCGAGCCATGTGAGAGGACTCGTGCATCCCTTCATGCTGGAAAAAAGAGGCATATCTCAAC
ATTCAAGTTGTTGTCAGGGAGAGAATCCAACTGCTTAGGGATTGGTAGGTTCTCTTCAGCTGAT
TGCTCTTATGCTCTTCGTAAACACCTACCAGTAAAAGGCCCATGGTGTGTTGATGACATGGACA
GTGAAGCCTACATATCTCAATTCTCCGCAGATGGTTCCCTTCTCATTGGAGGGTTCCGGGTATG
TCGTTGTGCTATTATAGGGAAAATTATAACCATTACCACATGAGTTTAGCTTTTGTTTAGATAC
CTTGGCTACACAAAATGTTGTGATATGGGTGACTGATAATCCTTTATGCCAACAATTAATCAGG
GTAGCCATATCAGAATCTACAATGCTGAGAAAAAGTGGACGATACATAAGGACATAACCTGCAA
AAAGCTACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAGTAAGACTC
TTATGCATTGTTCTCATTCTTTCTTTTCTTTTGTGTGCTGTTTACTCATTGACATCTAGTGAAC
TCACTCTTTTCAGGATAACATATATGATTCCATTTTTTGTAAATAAAAATTCGCATCAATGTGC
TTGAATAATATTTATTACAGTCTGACTATTTTTAGTTCCATAGTGTGTTTCTTTTTTCCCCTTC
ATACATGGATTTGAGCCCTTTGTTTGGGTAATGCAAGTTTGAACCTATTGTGCATAAAGAAAAT
ATGAGTGTTCTCTGAGTTAGAATAACATATTTGATTCCTAGATATACTAAAATTTGCAGATTAC
CACCTTCAAAATCCATGCAATCTGCATATTTTTATAAGCATTTTGGCTCCATTGCTGTCCATGT
TATGTACCCTATAAGCAAGATGGACTCTGAGTAACTCAACATTTGATTCCCCTTTTTTCTAAAA
AAAAATGTGGTAAATAGAAATATAGACCATGAAAAATTGACCAGGGAACTGACAGCCTCTTTAG
GGATATATCATGATAGATTTATAAATTCCAAAACAAATCATGGACCATATGGATTGTCAGTTCC
CCTGGGTACTAAGACTGTACTATATGGACCATAGCTTTAATTATTACAGTCCACTATGATTATA
CAACAAACTGTTATTGCACTTCATATATCTCATCAAATAATTGTTGCTTATGTTTGTATCTTCT
GGACCTTTTCTAGTAGCCTGTCCCTACAGAACTTATGATACATGTGTTCTTTGAGGACTGAGTA
AGCTTAGATAGACTAATTTCTACATGTAATTTTTCAACTTTGCACTTCTTTATTTTCTTTCACT
AGCTTAGAAGTATTTACAAGAGTTCTTCCTATAATTCCTAACAAGCTACCTTTAGATGTCTCCC
TAAGTTCTATTCATGAAGTTACACTTGAGACTAGTTCAGGTCTTTTTGTATATTTGTTTTATAT
CATTAACTAAGTGTTACTTGTTCTTTTTGCAGGCTTATTCCAGTCTGTCACCTATCGTTCATAT
GGTAGATATCCAGAATGGCATGAGAGAATCACATGCCAATATTACG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021