Detail information of BGIOSGA003571_circ_igg.5


General Information
CircRNA Name BGIOSGA003571_circ_igg.5
ID in PlantcircBase osi_circ_002058
Alias 1:17820674|17825504
Organism Oryza sativa ssp. indica
Position chr1: 17820674-17825504  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003571_circ_igg.1 BGIOSGA003571_circ_igg.2 BGIOSGA003571_circ_igg.3 BGIOSGA003571_circ_igg.4 BGIOSGA003571_circ_g.1 BGIOSGA003571_circ_g.2 BGIOSGA003571_circ_g.3 BGIOSGA003571_circ_g.4 BGIOSGA003571_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTGTTACG
TACACTAATTCGTTGCTATTTTTCCCCAATACACAGtatccaaacatgggctggaaaaggaaga
cacatcatggaggatcatgtcatcaacaacaatcctgtccttcacatggtaatgaattgtctgc
gatagatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATCCAAACATGGGCTGGAAAAGGAAGACACATCATGGAGGATCATGTCATCAACAACAATCCT
GTCCTTCACATGGTAATGAATTGTCTGCGATAGATGAGGAGGTTTCCCATCTTACGAGGCTTAA
ATCCGAGCCATGTGAGAGGACTCGTGCATCCCTTCATGCTGGAAAAAAGAGGCATATCTCAACA
TTCAAGTTGTTGTCAGGGAGAGAATCCAACTGCTTAGGGATTGGTAGGTTCTCTTCAGCTGATT
GCTCTTATGCTCTTCGTAAACACCTACCAGTAAAAGGCCCATGGTGTGTTGATGACATGGACAG
TGAAGCCTACATATCTCAATTCTCCGCAGATGGTTCCCTTCTCATTGGAGGGTTCCGGGTATGT
CGTTGTGCTATTATAGGGAAAATTATAACCATTACCACATGAGTTTAGCTTTTGTTTAGATACC
TTGGCTACACAAAATGTTGTGATATGGGTGACTGATAATCCTTTATGCCAACAATTAATCAGGG
TAGCCATATCAGAATCTACAATGCTGAGAAAAAGTGGACGATACATAAGGACATAACCTGCAAA
AAGCTACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAGTAAGACTCT
TATGCATTGTTCTCATTCTTTCTTTTCTTTTGTGTGCTGTTTACTCATTGACATCTAGTGAACT
CACTCTTTTCAGGATAACATATATGATTCCATTTTTTGTAAATAAAAATTCGCATCAATGTGCT
TGAATAATATTTATTACAGTCTGACTATTTTTAGTTCCATAGTGTGTTTCTTTTTTCCCCTTCA
TACATGGATTTGAGCCCTTTGTTTGGGTAATGCAAGTTTGAACCTATTGTGCATAAAGAAAATA
TGAGTGTTCTCTGAGTTAGAATAACATATTTGATTCCTAGATATACTAAAATTTGCAGATTACC
ACCTTCAAAATCCATGCAATCTGCATATTTTTATAAGCATTTTGGCTCCATTGCTGTCCATGTT
ATGTACCCTATAAGCAAGATGGACTCTGAGTAACTCAACATTTGATTCCCCTTTTTTCTAAAAA
AAAATGTGGTAAATAGAAATATAGACCATGAAAAATTGACCAGGGAACTGACAGCCTCTTTAGG
GATATATCATGATAGATTTATAAATTCCAAAACAAATCATGGACCATATGGATTGTCAGTTCCC
CTGGGTACTAAGACTGTACTATATGGACCATAGCTTTAATTATTACAGTCCACTATGATTATAC
AACAAACTGTTATTGCACTTCATATATCTCATCAAATAATTGTTGCTTATGTTTGTATCTTCTG
GACCTTTTCTAGTAGCCTGTCCCTACAGAACTTATGATACATGTGTTCTTTGAGGACTGAGTAA
GCTTAGATAGACTAATTTCTACATGTAATTTTTCAACTTTGCACTTCTTTATTTTCTTTCACTA
GCTTAGAAGTATTTACAAGAGTTCTTCCTATAATTCCTAACAAGCTACCTTTAGATGTCTCCCT
AAGTTCTATTCATGAAGTTACACTTGAGACTAGTTCAGGTCTTTTTGTATATTTGTTTTATATC
ATTAACTAAGTGTTACTTGTTCTTTTTGCAGGCTTATTCCAGTCTGTCACCTATCGTTCATATG
GTAGATATCCAGAATGGCATGAGAGAATCACATGCCAATATTACGGTATATCCTCTGATGATAA
CAAAAATAGGAAATTTGGAGTCTATTTGTATTGTGTTGCAGCATGTGCTGACTCCAGAGGCACT
TGAAAAAACATACCATGGTTTTACTTATATTTAAAAATTCTAGAGGCGTTTTTATTTGATAAGA
AACAATTATACATAATTAAAAACTATAACCTTTGGAGTTGGGGCGCATTATGGTTAGTGTGCAA
ACATGAAAAATAAATCAACACTATTATACAGACCTGCCAGCCCATTCAGGTTGTCACAAAAATT
ACTCTATTCTACCCCTTCAAAATAAAACCACCTCCTAAATGGATATTTTAAATTAAAAAACCCC
TGAGACTGTTTCGGAGGTAGTTTTGCCATTGTGACAGCTGGCGTGCCTATGAGATGATGAGGGC
AATTTTCTTCGTGCTATGTCTTCTTCCTCAGTTACTGACTTTCACTGTGGCCCAAGGTTCGAAA
AGGCGGTATCCAGTTTTGTGTGGTGACCCCACCTTGTAGTGTTTATGCGGCATAATTGGATGCT
TATACGGTATAATCGGACACTTATGTGGCTTAAGTGTACAAGGTTGGGGCACCTGTTCCTTGTA
TGCAGCCTTTTAGACCTTTTTTCAGAACACTGCTATGCCTAGAGTGCAACAACGCCCTTAGTTG
CCACCAACCAAAGCCAAGCCCAAGTGAGTGACCATTTTCTTGAGTCAGTTCAATGTCAACAGTC
ATGGTGGCAAAACCACCCCGAAAACCACCATAGGAGGAAGAACGCCTGGTTTCATACTTAGGAG
ATTAAGTAGGCTGACCATAATATTCGAGGGCGTTTAGTAGACTTTTTCCTTGTCAAAATAGTAT
GTACTAGTTGTTAGCATATTTATTGATGGTTGTGACTTCTATTTCTACTGTTTTCTTTTTGGAA
ATAATTGTCCTTATGTACGTTTTTACATATTCTGTTTTTATTTATAATGCAGCAAGTTCACGAA
GGCTTGGAGTTCTCTAATGATGATGATGGGTTCTCCTTTGCCATATTTTCTGTTAAGTTTTCAA
AAGATGGCCGAGAACTTGTTGTTGGAAACAACAATGAATCAATATGTATTTACGATATTGGATC
AAACAAAGTAACAGAACGCATTCACGCTCATTCGGTATGAAACAGATGCATGACTGAGCTACAT
GCTTTTATTGTCAATGTATGACTGTTTTCTGTCCCACCAATTGATATCTGCACATTATCTTTTC
TTCCGTGCATCATTACCATTTTGAACAAGTGGTATTTACAATGTAATTAGAATAACACCGTTTG
TTTCTTTCTTAGATAACTTGACAAGATTAGGTTCTTAGTGTAGCTTGATGCGTCACACTAACAC
AGTATATACATATGGGAGGAATTTAAGACAAAAGGGATTGTAGGTCAAGGTCACTAACAAAGGT
TTCTGCCATTTTATTCTGAAGAATGATGATATATTTAGGAAGCTTTGATCCAACAAAACTGGAA
ATTTGCACAAAAGAATCAAAATTTGCATGTTTATCAAATCATCTGGTGTACTAAAAATTCTCAT
TCTGGGTATAATAGACAAGTTAATGAACATGCTTCAGCAGGCAAAAATATCATCAGCTAGGAGC
AGATGTCTTGCTAAAATTTATTTTTGTCACAAATGCCATAAATGTGGAGTTATTGAAGCAGTAG
AGTTAGGCACTGCATCAATTCCTGCCAGTTTCCTGAAAGTAGTAGTGGACTCAGCCCAGTATGT
TCGAAACATATACTGACATAAACAACTAGAAATATGAAATCAAACATTTCAGGGATGTTGAGTG
AACTTGAAAACTTGCCCTTGTCCAGAAACCACCTTGATAGTGAGATCTCAAACAGTAGATGGGA
CTATCTGTAACATGACAATGTAACGTATGTGCTACATTTTATATTGTTGGATTAACTTAGGTTT
GGAACCTTTCTTGATAATATATTTTTCATTTCTCTTTTGTGGTAGCCATTGTATTAGAAAAAAA
AAGTTATGTTTCTTACTGAATCTTATTTTCTCAACTTTTGGTCTTTAAAGGCTGATGTCAACGC
AGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAGCCTCTGTAAG
GTGAGACTAATATTTCCCAATTTCATTTACTCTTTCTTTAAAGATGATTCTATTTGCATTTGCT
GGTTTAAGTCAGACAGCAACATTGCAGGTTTATCTGGCTGATCGTGCCAGAAGTCCAGCAGTGC
TTGAATATTTGGTGTAAATACACTGTCTACACTAAGTCACTAACTCACTAACCAATATGAAACA
TGAGCAATGAGTTCAGCCTCTAGAGGACCGATTTGTGTAGCCGCTAGAGGAACCATTGTTCAGT
AGTGCAAACTCTAACACCAGTCTGTTTGGTATTAATGCATGATCAGTCTTTTTGCTTGCCTAGG
AGATGTGAAATCTGTGAAGGGCTTCCTATCATATCGAAGTTCTGATAAGTCACCCATGGAGGCT
TTCTTTGACTGACACTGTTATCCAATCTTCAGGTCTGGGATAGGCGCTGCAACAAGAGAGGAAA
ACAAGTTGGTGTTTTGACAGGTCATTTAGATGGGATTACATTTATTGATAGCCGTGGAGATGGG
CATTATTTTATTTCAAATTGCAAGGATCAAACTATTAAACTATGGGACATCAGGAAAATGTCGT
CCACTGTGAAAGAGTAAATACAGCTCTTGCTTTTGCATGATTATTCCTCTAAACCAAACCACTT
TTTATGCTTGAATCTTAAACGCAACATATTGTAAGCAAGTAGGAAATGCTAAAATCAAAATCTG
CCTTTGACTAGATCTGCTTGGCCTGATTTGTCCAAGATCTTGTCTACATGCCTGACCCAAAGTC
CAAAATATAAAATAGGCTAAAGTTATTCGACAGAAATACTATTTTTACTTGTAGTTTGTTTTTG
CAGCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCAGAAGCCCGA
TATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTGTTACGTACAC
TAATTCGTTGCTATTTTTCCCCAATACACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021