Detail information of BGIOSGA003571_circ_igg.2


General Information
CircRNA Name BGIOSGA003571_circ_igg.2
ID in PlantcircBase osi_circ_009499
Alias Chr01:16610075_16612925(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 17820673-17823523  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003571_circ_igg.1 BGIOSGA003571_circ_igg.3 BGIOSGA003571_circ_igg.4 BGIOSGA003571_circ_igg.5 BGIOSGA003571_circ_g.1 BGIOSGA003571_circ_g.2 BGIOSGA003571_circ_g.3 BGIOSGA003571_circ_g.4 BGIOSGA003571_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAGATGGCCGAGAACTTGTTGTTGGAAACAACAATGAATCAATATGTATTTACGATATTGGA
TCAAACAAAGTAACAGAACGCATTCACGCTCATTCGgtatccaaacatgggctggaaaaggaag
acacatcatggaggatcatgtcatcaacaacaatcctgtccttcacatggtaatgaattgtctg
cgatagat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCCAAACATGGGCTGGAAAAGGAAGACACATCATGGAGGATCATGTCATCAACAACAATCC
TGTCCTTCACATGGTAATGAATTGTCTGCGATAGATGAGGAGGTTTCCCATCTTACGAGGCTTA
AATCCGAGCCATGTGAGAGGACTCGTGCATCCCTTCATGCTGGAAAAAAGAGGCATATCTCAAC
ATTCAAGTTGTTGTCAGGGAGAGAATCCAACTGCTTAGGGATTGGTAGGTTCTCTTCAGCTGAT
TGCTCTTATGCTCTTCGTAAACACCTACCAGTAAAAGGCCCATGGTGTGTTGATGACATGGACA
GTGAAGCCTACATATCTCAATTCTCCGCAGATGGTTCCCTTCTCATTGGAGGGTTCCGGGTATG
TCGTTGTGCTATTATAGGGAAAATTATAACCATTACCACATGAGTTTAGCTTTTGTTTAGATAC
CTTGGCTACACAAAATGTTGTGATATGGGTGACTGATAATCCTTTATGCCAACAATTAATCAGG
GTAGCCATATCAGAATCTACAATGCTGAGAAAAAGTGGACGATACATAAGGACATAACCTGCAA
AAAGCTACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAGTAAGACTC
TTATGCATTGTTCTCATTCTTTCTTTTCTTTTGTGTGCTGTTTACTCATTGACATCTAGTGAAC
TCACTCTTTTCAGGATAACATATATGATTCCATTTTTTGTAAATAAAAATTCGCATCAATGTGC
TTGAATAATATTTATTACAGTCTGACTATTTTTAGTTCCATAGTGTGTTTCTTTTTTCCCCTTC
ATACATGGATTTGAGCCCTTTGTTTGGGTAATGCAAGTTTGAACCTATTGTGCATAAAGAAAAT
ATGAGTGTTCTCTGAGTTAGAATAACATATTTGATTCCTAGATATACTAAAATTTGCAGATTAC
CACCTTCAAAATCCATGCAATCTGCATATTTTTATAAGCATTTTGGCTCCATTGCTGTCCATGT
TATGTACCCTATAAGCAAGATGGACTCTGAGTAACTCAACATTTGATTCCCCTTTTTTCTAAAA
AAAAATGTGGTAAATAGAAATATAGACCATGAAAAATTGACCAGGGAACTGACAGCCTCTTTAG
GGATATATCATGATAGATTTATAAATTCCAAAACAAATCATGGACCATATGGATTGTCAGTTCC
CCTGGGTACTAAGACTGTACTATATGGACCATAGCTTTAATTATTACAGTCCACTATGATTATA
CAACAAACTGTTATTGCACTTCATATATCTCATCAAATAATTGTTGCTTATGTTTGTATCTTCT
GGACCTTTTCTAGTAGCCTGTCCCTACAGAACTTATGATACATGTGTTCTTTGAGGACTGAGTA
AGCTTAGATAGACTAATTTCTACATGTAATTTTTCAACTTTGCACTTCTTTATTTTCTTTCACT
AGCTTAGAAGTATTTACAAGAGTTCTTCCTATAATTCCTAACAAGCTACCTTTAGATGTCTCCC
TAAGTTCTATTCATGAAGTTACACTTGAGACTAGTTCAGGTCTTTTTGTATATTTGTTTTATAT
CATTAACTAAGTGTTACTTGTTCTTTTTGCAGGCTTATTCCAGTCTGTCACCTATCGTTCATAT
GGTAGATATCCAGAATGGCATGAGAGAATCACATGCCAATATTACGGTATATCCTCTGATGATA
ACAAAAATAGGAAATTTGGAGTCTATTTGTATTGTGTTGCAGCATGTGCTGACTCCAGAGGCAC
TTGAAAAAACATACCATGGTTTTACTTATATTTAAAAATTCTAGAGGCGTTTTTATTTGATAAG
AAACAATTATACATAATTAAAAACTATAACCTTTGGAGTTGGGGCGCATTATGGTTAGTGTGCA
AACATGAAAAATAAATCAACACTATTATACAGACCTGCCAGCCCATTCAGGTTGTCACAAAAAT
TACTCTATTCTACCCCTTCAAAATAAAACCACCTCCTAAATGGATATTTTAAATTAAAAAACCC
CTGAGACTGTTTCGGAGGTAGTTTTGCCATTGTGACAGCTGGCGTGCCTATGAGATGATGAGGG
CAATTTTCTTCGTGCTATGTCTTCTTCCTCAGTTACTGACTTTCACTGTGGCCCAAGGTTCGAA
AAGGCGGTATCCAGTTTTGTGTGGTGACCCCACCTTGTAGTGTTTATGCGGCATAATTGGATGC
TTATACGGTATAATCGGACACTTATGTGGCTTAAGTGTACAAGGTTGGGGCACCTGTTCCTTGT
ATGCAGCCTTTTAGACCTTTTTTCAGAACACTGCTATGCCTAGAGTGCAACAACGCCCTTAGTT
GCCACCAACCAAAGCCAAGCCCAAGTGAGTGACCATTTTCTTGAGTCAGTTCAATGTCAACAGT
CATGGTGGCAAAACCACCCCGAAAACCACCATAGGAGGAAGAACGCCTGGTTTCATACTTAGGA
GATTAAGTAGGCTGACCATAATATTCGAGGGCGTTTAGTAGACTTTTTCCTTGTCAAAATAGTA
TGTACTAGTTGTTAGCATATTTATTGATGGTTGTGACTTCTATTTCTACTGTTTTCTTTTTGGA
AATAATTGTCCTTATGTACGTTTTTACATATTCTGTTTTTATTTATAATGCAGCAAGTTCACGA
AGGCTTGGAGTTCTCTAATGATGATGATGGGTTCTCCTTTGCCATATTTTCTGTTAAGTTTTCA
AAAGATGGCCGAGAACTTGTTGTTGGAAACAACAATGAATCAATATGTATTTACGATATTGGAT
CAAACAAAGTAACAGAACGCATTCACGCTCATTCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021