Detail information of Os01g0383700_circ_g.5


General Information
CircRNA Name Os01g0383700_circ_g.5
ID in PlantcircBase osa_circ_001769
Alias Os_ciR1245
Organism Oryza sativa
Position chr1: 16050781-16052933  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0383700
Parent gene annotation Similar to LEC14B protein. (Os01t0383700-01)
Parent gene strand +
Alternative splicing Os01g0383700_circ_g.6 Os01g0383700_circ_g.7 Os01g0383700_circ_g.8 Os01g0383700_circ_g.9 Os01g0383700_circ_g.10 Os01g0383700_circ_g.11
Support reads 14/6
Tissues root/shoot, root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os01t0383700-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTGTTACG
TACACTAATTCGTTGCTATTTTTCCCCAATACACAGcaagttcacgaaggcttggagttttcga
atgatgatgatgggttctcctttgccatattttctgttaagttttcaaaagatggccgagaact
tgttgttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 160
Transcript exons: 16050781-16050821,16052815-16052933
CAAGTTCACGAAGGCTTGGAGTTTTCGAATGATGATGATGGATGACATATCCCTCAGAAGCCCG
ATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTGTTACGTACA
CTAATTCGTTGCTATTTTTCCCCAATACACAG

Genomic sequence CAAGTTCACGAAGGCTTGGAGTTTTCGAATGATGATGATGGGTTCTCCTTTGCCATATTTTCTG
TTAAGTTTTCAAAAGATGGCCGAGAACTTGTTGTTGGAAACAACAATGAATCAATATGTATTTA
CGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCGGTATGAAACAGATGCATG
ACTGAGCTACATGCTTTTATTGTCAATGTATGACTGTTTTCTGTCCCACCAATTGATATCTGCA
CATTATCTTTTCTTCCGTGCATCATTACCATTTTGAACAAGTGGTATTTACAATGTAATTAGAA
TAACACCATTTGTTTCTTTCTTAGATAACTTGATAAGATTAGGTTCTTAGTGTAGCTTGATGCG
TCACACTAACACAGTATATACATATGGGAGGAATTTAAGACAAAAGGGATTGTAGGTCAAGGTC
ACTGACAAAGGTTTCTGCCATTTTATTCTGAAGAATGATGATATATTTAGGAAGCTTTGATCCA
ACAAAACTGGAAATTTGCACAAAAGAATCAAAATTTGCATGTTTATCAAATCATCTGGTGTACT
AAAAATTCTCATTCTGGGTATAATAGACAAGTTAATGAACATGCTTCAGCAGGCAAAAATATCA
TCAGCTAGGAGCAGATGTCTTGCTAAAATTTATTTTTGTCACATGTCATAAATGTGGAGTTATT
GAAGCAGTAGAGTTAGGCACTGCATCAATTCCTGCCAGTTTCCTGAAAGTAGTAGTGGACTCAG
CCCAGTATGTTCGAAACATATACTGACATAAACAACTAGAAATATGAAATCAAACATTTCAGGG
ATGTTGAGTGAACTTGAAAACTTGCCCTTGTCCAGAAACCACCTTGATAGTGAGATCTCAAACA
GTAGATGGGACTATCTGTAACAAGACAATGTAACGTATGTGCTACATTTTATATTGTTGGATTA
ACTTAGGTTTGGAACCTTTCTTGATAATATATTTTTCATTTCTCTTTTGTGGTAGCCATTGTAT
TAGAAAAAAAAAGTTATGTTTCTTACTAAATCTTATTTTCTCAACTTTTGGTCTTTAAAGGCTG
ATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATACTCTGGAAGTGATGATAG
CCTCTGTAAGGTGAGACTAATATTTCCCAATTTCATTTACTCTTTCTTTAAAGATGATTCTATT
TGCATTTGCTGGTTTAAGTCAGACAGCAACATTGCAGGTTTATCTGGCTGATCGTGCCAGAAGT
CCAGCAGTGCTTGAATATTTGGTGTAAATACACTGTCTACACTAAGTCACTAAGTCACTAACCA
ATATGAAACATGAGCAATGAGTTCAGCCTCTAGAGGACCGATTTGTGTAGCCGCTAGAGGAACT
ATTGTTCAGTAGTGCAAACTCTAACACCAGTCTGTTTGGTATTAATGCATGATCAGTCTTTTTG
CTTGCCTAGGAGATGTGAAATCTGTGAAGGGCTTCCTATCATATCGAAGTTCTGATAAGTCACC
CATGGAGGCTTTCTTTGACTGACACTGTTATCCAATCTTCAGGTCTGGGATAGGCGCTGCAACA
AGAGAGGAAAACAAGTTGGTGTTTTGACAGGTCATTTAGATGGGATTACATTTATTGATAGCCG
TGGAGATGGGCATTATTTTATTTCAAATTGCAAGGATCAAACTATTAAACTATGGGACATCAGG
AAAATGTCGTCCACTGTGAAAGAGTAAATACAGCTCTTGCTTTTGCATGATTATTCCTCTAAAC
CAAACCACTTTTTATGCTTGAATCTTAAACGCAACATATTGTAAGCAAGTAGGAAATGCTAAAA
TCAAAATCTGCCTTTGACTAGATCTGCTTGGCCTGATTTGTCCAAGATCTTGTCTACATGCCTG
ACCCAAAGTCCAAAATATAAAATAGGCTAAAGTTATTCGACAGAAATACTATTTTTACTTGTAG
TTTGTTTTTGCAGCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTC
AGAAGCCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTG
TTACGTACACTAATTCGTTGCTATTTTTCCCCAATACACAG
Conservation Information
Conserved circRNAs osi_circ_002059* osi_circ_009501
PMCS 0.360380558
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017