Detail information of 4_circ_ag.6


General Information
CircRNA Name 4_circ_ag.6
ID in PlantcircBase ath_circ_033395
Alias At_ciR1415
Organism Arabidpsis thaliana
Position chr4: 14247156-14252073  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G28860_circ_g.14 4_circ_ag.15 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 3/6
Tissues leaf/root, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGGAAATTC
TCACCAAAGACAGTCTTGATGTTGGCTGATCAAATGctaactagaatagaatatgtacattcca
aaggatatctgcatagagatataaaaccagataactttctcatgggcctaggccgcaaagcgaa
tcaggttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAACTAGAATAGAATATGTACATTCCAAAGGATATCTGCATAGAGATATAAAACCAGATAACT
TTCTCATGGGCCTAGGCCGCAAAGCGAATCAGGTTTATCTAATTGACTTTGGACTGGCCAAAAG
ATATCGTGATGCCAACACCAACCGCCACATCCCTTATAGGTATTTGTGGCCATGGTTCATTATA
TTGTGTCTACCATCTGGAGGTGGTAAATTATCTTATCTGTTATAAGTTTTTAAGGTCACATTAT
ACAACTTATTACCTTTTATTTGGTTGTATTCAGGGAAAACAAGAATTTAACAGGAACTGCACGA
TATGCAAGTTGCAATACACATCTTGGTATTGGTAAGGAATGCTGCCACTTTTTTCTCCCCTTTG
TGAAGTAAAGTTTTTGCTCACATATTTCGATTTCTCTTTCGCAGAGCAAGGTAGACGGGATGAC
CTAGAGTCTCTTGGATATGTGCTTCTGTACTTCTTAAGAGGAAGGTGTGTTGACTTTTTGACTT
GAAAGAACCTAGTTAACATTGTGTTTTTGGCAGGGTATTGTTTTTCCTTGTTTGAGATTTACTT
AACCGTTTTCTTGCTTTACATTTTGTTCCTATTTTAATGAACCTCCTTTTCTAGCCTTCCATGG
CAGGGTCTTAAGGCTGTTGACAAGAAGCAAAAGTATGACAAAATTTGTGAGAAGAAGATATCAA
CTCCTATTGAGGTCTATTTCCCTCTACTGTGTGAGTGAATTGTTTTTTGTTAATCCTCATTCAA
CTGAATAATATCCCATCCTTTGTAGGTTCTATGCAAAAGCCACCCCGTGGAGTTTGCTTCATAT
TTTCATTATTGCCACACACTGACATTTGATCAACGCCCTGATTATGGATTCTTGAAGCGGCTTT
TTCGTGATTTATTCTCACGGGAAGGTACTTTGAGAAAGACATCCCTCCATCATTTTTATAATCC
TCTCTGCTAGCATCAGTTATCTACCTAGCTCACTTAAACGTTTTCTTCTTTGCAGGATATGAGT
TTGACTATATATATGACTGGACTATTATAAAGTATCAGCAATCACAGAAAACTAGAAGTCAGTC
TCAGGTATAGTTTATCAATACCATTTGTTATTTTTTTTTCTCCAGGTGTATGCATATTTTGTCT
TGTTCATAGAGAAGATTTCCTGGGGAGAAGTTTTACTTGGTTTTGCTATTTTTTAGTTTTGGTG
CTAAATATAGATATGCCTGTCTTCCTAACAATAAACTGTCATGCTGCAGGCCGTTCCTGGGTCT
AGTAATGCTCGTGCAATACCAATGGACACAAGCAATCATCGAGGTCAGCTCGAGTTATAAATTT
TAATTGTGTCACTTTCTGATTAATTTTGTAATAGTATATGATGTGTTTTTTGTTTTCTCTCGAC
TTTCACACTGGACTCAACTGGCATAGAGTGTTTGGCTGATTTAGTTTCCCGTTGCAACTGTTTA
TTTCAATATCTTGATGCTAACTCTCCGTTTGGCAGGAGGAACTAAGATTTCACATGAAGCCCAA
GTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGGTCCAAGCCCACAGATTAATACCGCTGTAG
GGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAATGTACGTGCTTATTCATTTGCCTCTTCCAA
ATAAATGTTGTATCCTGCAACCCTCCCCCTTGTGTTAGCATCTCATGCCTGCATCTGTGTTGCT
TCAGAGTTCTGCATGGTTCTCTGCTTAAAGCTTTTACCTGTTTTGCATGGTCAATTGTCATCAA
CGAGCTCTATATTGTGATATGAACTACATATAGCATAAATGATTAAAACACGATACTGATCATC
ACGAAATATGCTCTTGACCATTATTTTACTGAAAACCCATTGCAGATGAACATGCCATCATCCA
CTTCATTATCTCCTGCGGGTACCTCAAAAAGAAATGTCAGACCCGAAACCTCAAATTCTGGGTT
TGGGAGCGGGAATAAAACCGGCGGTTGGACTTCACCATTCATGTCACCGGGGAAATGATGCAAA
AAAAGTTGGAGTATATCATTCATCTGATCTGCTGAGCAAGATTATGTGTGCCTTTGGGTCTAAA
CTGTGATTTCTGCAGTGAAAAGCTCTAGACTGAGGTTGAAGATCTGAATGGAGTTTTTCCATGA
ACAGCTTACTGTTTGACAAAAGGCATGAAGATTATGTTTGCTTTCCTTCAAGATTCTCACAAAT
GACTGACTTCAACCTTTGTATAAAATCTTGCAACCGGGCGTGTAATTTGGTTCTTGTGATTCAT
TCTCCCAAGTTTTCTTCTATAAAACTTTGTTCGTATTTCTGTACGTAGTTCCCTGTGTTGGGGC
ATAACCTGGGTTTGCTGTGTCATCAACATTGTTTGCAGAAAATCAAGAGCAAAGCATGAGCAGC
TTCAGCAGAGATGCCTTCAAAGGCTTGAGTCAAGAGTTGCTTGTGGCAGGGACATGTCACCATC
AAGCTAATGTGCAGCTGACGAGAACGTAAAAGGATAAGCTATGGCTAGCTTCTGGAATGCTCCG
AGAAACACTTCCCCCTTTTTTTTTCTCTGAATTTCCTATTCAGTTTAATGGTATTCTGTGTTTG
ATTTTTCTTACTCGATTTTGTGCATTGAAAAAAATTATATCAAAAAGCTTGACTTGATCCAAAC
ATGCATTTTCAATTGCTATTATTAAAAAAAAAAAACGTATAAAATTGTAGTCTCAATATTGAAA
TACAAACACCTAGAATTGATCGATTTGGTAGAGAACTAGTTAGTGGATTAAATTTGGGTTGGCT
GATTTTCGAGCCATAAACTATTTCGATTCTCAGCTTTCACACCCGGACTTTTGGGCCTTTAAAT
TTCCACCATCAACTTTCATATTCCCAAAATTACATCATCTATTTTTGGATTCATGCTTAAACAT
ACATTTCCAATTGAACCATTCATTTAACCGGGATTAACCACAAATCCGCGTTTACTGTACCGCG
ATTGCGATTAACCCAACTAATACCCAGACCCGTTAAGAAAACGACGTCGTTTTCATTTCGTTTA
ACTCATCAAAAAGAGAAAGAAAACGACGTCGTTTTCATTCTTCTTCTTTAACTCTCAAATCGAT
TTAGTCGTTCTTCTTTAATCTCGACACTGTGAAATTAGGGTTCTTGAGAGAGAAAGACAAAAGG
GGATTTGGGGTTTTCTTCTTCGGTTCGAATTTTTGGGTCTCGATTTGGGTTTCGAATAGGGAGA
AATGAAGAATTGGTGGGAGGAAAGATTGATTTACCAAAGCGATCCAGATGACCCCGATTTCGAA
CCTCCAGAGAGTGACATTGAAGCCGACGATGGAAGTGATAGTGGTGATAGCGGAGTCGAGGAGG
ACGAAGCCACCAGAATCGAGGGAGAGGACGTCGGGATAGATGGAGACAGAGCTTCTGATGGAGA
GGAAAATAGAGAAGACGATGGTGACATAGCGTCTGATGGAGACGTCAATCTAGAAGACGATGGA
GACAGAGATGAAAGTCAAAAGAAGAGGACTACCAAATCGATTTGAGAGTTAAAGAAGAAGAATG
AAAACGACGTCGTTTTCTTAACGGGTCTGGGTATTAGTCGGGTTAATCACAATCGCGGTACAGT
AAACGCGGATTTGTGGTTAATCCCGGTTAAATGAATGGTTCAATTGAAAATGTATGTTTAATCA
TGAATTCGAAAGTAGATGATGTAATTTTGAGGAATATGAAAATTGATGGTGGAAATTTAAGGGC
CCAAAAATCCGGGAGTGAAAACTAAGAATCGAAATAGTTTATGACTCGAAAATCAGCCAACCCA
TTAAATTTTCGAACCTTCATCATTTTGCAGACCCCAAAAACGGAAATCATCAAATCATCCACCG
TGCCAGCGTGACATTACAAAATCACGTAAATACCCTCGTGTTTGTTTATAAGGTAAAAAAAGAT
TGGCGGACCCAAAATGGTGCAGTAGTTAGGTGTACAAATTTTTTTTTGAAGGATCACTACTACG
GCTCAAACAAGCCTGGGTCCATGTCACTACCACCGATGTCAGTCAAACAAAAATAATAATATAT
GTTTTTAAGTTCCTCTAATTTCAATCTTCTAAACAACAACCCTAAATCCTTATCTCTATCCTTG
CGCTTGATCCAGATTCGGTTCTGATTGGAGCTGCCATGGAACGCATCATCGGCGGCAAGTACAA
GCTCGGACGGAAGATCGGCGGTGGTTCGTTCGGAGAGATTTTTCTAGGTTTTGTGTTCTCCTCT
GTTCTTGTCCCTTTGGTTTTCCGAGTTTGCTTTTTTATTTGAAATTGACGCTCTTCTCTTCTGT
TTGTTGTTTTCGCAGCTACGCACGTCGATACCTTCGAGATCGTAGCTGTTAAGATCGTAAGTCC
CAGCTCAATTTGCCTTGAGACGAATTGAATCCATCCAATCTGGAGATTTGATTTGGATCTGCTA
TGTCTCTTAATTGATTTTGTTTGAATTGCTTTACTCTAAAATTGAGCAAGGTTTTAAACTCGGT
GCTTTTTAGCTGCAATATATTCTTCAAGCTAACACTTGTTTTTAATTCAATCATTTTCTCTTGC
AGGAGAACAGTAAAACAAAGCATCCTCAACTTCTCTATGAAGCTAAGCTATATAGAATTCTTGA
AGGAGGAAGTATGATTCTCTTTCCTCTCTTTTCTCAGTTGTTGGACATTGGAGGGATTCATTAG
CAGTACAATACTAATTTTTATGTTATGTGTCAGGTGGAATTCCGCGCATAAAATGGTTTGGAGT
TGATGGAACAGAGAATGCTTTAGTGATGGATTTGCTCGGTCCAAGTCTCGAAGATCTTTTCGTC
TACTGTGGGAGGAAATTCTCACCAAAGACAGTCTTGATGTTGGCTGATCAAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.643200627
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017