Detail information of EPlOSAG00000028235_circ_ig.3


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.3
ID in PlantcircBase osa_circ_009982
Alias NA
Organism Oryza sativa
Position chr11: 26555912-26557553  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11 EPlOSAG00000028235_circ_ig.12
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACTCTGAGTTTTAGATAAGAGGCTGTACTTCAATTAACTCGGCCATTGCTAGCCTTTCAACCT
CTTCACCACCAGAAAAGTCAGGGCGAAGTAAGTCAGtttcgttggtcagtgattgatctttgat
gaataattcttcaaggtcactgcattcaattccattgcggctcagaaactgcaacacaaagcaa
acgaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTCGTTGGTCAGTGATTGATCTTTGATGAATAATTCTTCAAGGTCACTGCATTCAATTCCATT
GCGGCTCAGAAACTGCAACACAAAGCAAACGAAATTCACATAAATAGCTAGCAAGCATTCAACA
ACTATAAGCATAGGAGAATCAAATACAGGCCATTCGGGCAGTGGAATAGAAGTCATTTAAGAGG
GTAAATATATACATCATAATTGACAGCGAGAGAAAATAAAACATGTAGGAGTAACTACAGAATT
ATAGAAAGGTGCCTTTATGCATGCATGATTGATCATTTGAGGGGAAAAGAGCAAAGTGTCGTTT
AAAACAAAACACTGCTTAGGGTCTAGCTGTCTAGGCATCGCACACCTTTATGCATGCATGATTG
ATCATTTGAGGGGAAAAGAGCAAAGTGTCGTTTAAAACAAAACACTGCTTAGGGTCTAGCTGTC
TAGGCTAGGCATCACACACAAGAAATTTCAGTTTCAAGAGGAATATACAGAATACACGGTTCAA
AACCCAAAGTGCCAAGCATGATATGTGAAATTGTGTTATCTGCACAGCTTACCGTGCGAATGCT
ACCAACATTGGATTTAGCTTTAAGGGTTTCAACGTCACGATCCAGTTGTTGCTTCCAATCTGTG
AGTAATGTTTCATCCTGCAAATTCAGTTGCTTGGATTAGATAATATACTTGAGCATAATACTTG
AACAAGATAACAAGGGATATTAGCACCTGTGGAAGTTGGATCGAAATTTTGTTAGGGAAAAGTT
TATTTAGATGTTTCATTGCCTTCGGACTTTCTTTGTTCCTTTCATGCAACCGACTACCAAAACT
ATCCTGCATTTTAGATATAACAATGCATCAGATAGTTATATCAGAACCATGGGTTCATATAGTG
CATTTATAAGCACTGATAGAAAGAACATTGTGACCAATAAGAATGAAAATTGTTACCGGGAAAA
GGTCAAATAGCGTCTGGCTGCTACTAGCAAACTTTGTAAAAAGAAATCCACCTGGGTGGGCCTA
CAACAGACACCATAGCACAACATCAGGATACATTTTATAGTGTACTTAACAAGCGATAAATGAT
AAGGATTAAAAATTAAAACAAAGATTGCATGCAAACGAACACCCAAGTGTCAAAGAGACAGAAC
CAACCAATTAGAACTGAATACCCAATGCCACCAAAGTTAGTTTTCACAACAGTTCAAATCAAAT
GAAAAAAAAAAGACAAGCTATGCAATGCCACATTGCCATAAACAAGCCCTCATAGAACAAATTT
GCATAATCTCTGAGATATAATATATGTACCTTCTCTTTGCGGCTGTCCATTTGAGTGTGAGATC
CTATAATAAGCACACCAGATGGAAGCGCTTCAAGCTTATTCCTCAAAGATGAAAGTGACTCTGT
AATTCCAGTGAATGATTTCTCTACATCCTTAAGTAACACTATCATAGGGCCAGCTTTGTGTTCC
TCTGAGATGACCTGACAGACAATCCATACAATTATGAAACAATAGAAAGAATACAAATTTATAT
TCGGATAACTCTGAGTTTTAGATAAGAGGCTGTACTTCAATTAACTCGGCCATTGCTAGCCTTT
CAACCTCTTCACCACCAGAAAAGTCAGGGCGAAGTAAGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.123464758
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017