Detail information of EPlOSAG00000028235_circ_ig.12


General Information
CircRNA Name EPlOSAG00000028235_circ_ig.12
ID in PlantcircBase osa_circ_009991
Alias Os_ciR5196
Organism Oryza sativa
Position chr11: 26560737-26561103  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0661400_circ_igg.1 Os11g0661400_circ_igg.2 EPlOSAG00000028235_circ_ig.1 EPlOSAG00000028235_circ_ig.2 EPlOSAG00000028235_circ_ig.3 EPlOSAG00000028235_circ_ig.4 EPlOSAG00000028235_circ_ig.5 EPlOSAG00000028235_circ_ig.6 EPlOSAG00000028235_circ_ig.7 EPlOSAG00000028235_circ_ig.8 EPlOSAG00000028235_circ_ig.9 EPlOSAG00000028235_circ_ig.10 EPlOSAG00000028235_circ_ig.11
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCCTCCTTTAAGGGGAACTTTTGTGCCAGCAGTTATGGACCTTCCGTTTAATTGGACCGTACC
CTTCTTGCCTAGAACTTCTAGCTCACATGTACCTTGaccagcaactggaggttctaaaagggtg
acaggagatggcggcaccattttaggaattttgtcattcaatggatgctgaaaaatctgtagga
aggtgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACCAGCAACTGGAGGTTCTAAAAGGGTGACAGGAGATGGCGGCACCATTTTAGGAATTTTGTCA
TTCAATGGATGCTGAAAAATCTGTAGGAAGGTGAAGGAAAGCAGAAGGTAAAACAAAAATATAG
ATAGAGCTATTTCCAGACTGTGCACATCTAAACTAATAAAGAAAGGAAAATTGATGAAAGGAAC
TGTATGATTGCATGAATAAAGAAGAAGATTAGGATACGTAGGCATGCTTGCCGCATGGACTGAA
AACAACTTCATCCCCTCCTTTAAGGGGAACTTTTGTGCCAGCAGTTATGGACCTTCCGTTTAAT
TGGACCGTACCCTTCTTGCCTAGAACTTCTAGCTCACATGTACCTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.142824546
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015