Detail information of BGIOSGA014529_circ_g.9


General Information
CircRNA Name BGIOSGA014529_circ_g.9
ID in PlantcircBase osi_circ_005672
Alias 4:27429377|27433983
Organism Oryza sativa ssp. indica
Position chr4: 27429377-27433983  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.2 BGIOSGA014529_circ_g.3 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.7 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.12 BGIOSGA014529_circ_g.13 BGIOSGA014529_circ_g.14 BGIOSGA014529_circ_g.15
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA014529-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGTAATGATATGCAAGGCACATCAAGTTGCCCTTGCACGATCCTCAAACTGATATGTCTTAA
AGCTCGCCTTGTCAATGTATCCATAGATTCAGAGATcatgtatggctttaaatatttggacagc
aaagaaccaacagctccctcattcattaagtaaagcttcttagctacacaaagctcaaaattat
ttgttgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTATGGCTTTAAATATTTGGACAGCAAAGAACCAACAGCTCCCTCATTCATTAAGTAAAGC
TTCTTAGCTACACAAAGCTCAAAATTATTTGTTGCTGCCAGTATCTCTTTCAAACTTTCTGAAT
TATCCATCCTTTCCAAAAATAGCTCCTTGAAACCAATGAGAATAGTAAACATCATTTGAAGTGG
ACAGAACAAACTTGTTACAGCTTAGAAGGGAGTTACTAGACTAACCAGCTGTTGCCCATACAGT
AGGTGCAAGAGAACCAGAGCTACTCTTCCAGCTTCAGGGTATCGTTTACAAAGTGTTGGACTGA
AAATAGTACACTCTTTCTCCGCCACTAGCTTTAATTCGTTTGCAAGAATTATTAATGGATGCTT
AAATTCTGCCTTTGATTGGCAATCTGATGAAATTAGGGCCTAATGAAGCATGGTATGATATCAG
AAATACAATAAATATTTTATTACCAAATGGATTGTTATTTAAGTGGCCCATCAGATGATTTAAC
TCACATGCTTATATGCAGCTTGAATGGATCTGACAACAAGAATGTGAATCAACTTAGATTCTTG
TGTAGCATCTAGTGGGGTCCCAATGAGCTGAAATTGACAAAAACACATCAAAGCATAGTACTTA
GAAGAACCTCATAAGGAAAATTGAGAATTTTAGTAGCATGACACAATGATCAAGAGTAAAATGC
AAGGCCAGTCCTTAAACTTGGGCTAGGGTGTCATCTAGGTCCATGAACTTGTAAAACGGGGTCC
TTAGGGTGCATTGGTTTGAAGCACAAGGGGTGAAAAGTCCCTCGTTTTCTGCGCGCACGCTTCC
CGAATTGCTAAGCAGTGTGTTTTTTGCAAAAAAAAAAATATAGAAAAGTTGCTTTAAAAATCGT
ATTAATCAATTTTTCAAGTTTGAAATAGCTAATACCCAATTAATCATATGCTAATGGCTCACCT
CGTTTTACTTATCTTCTCAATCTTCTCCTTTTCCCTCTAAAAAACACCCTTAATCTTGGTTTAA
TGTATCACTCGAGGCCCAATGTGCAGAGGATGCAACTCAGGCTTGTCCACAGTGACGAGAATTT
TGCACTTACGCCTCTTCACTATAGTATGCCCCGAAATCGACTCCTACCACCCCAAATCAACAAA
TATGCATTTCTCAGCATCCAGCAAATTCATAGTTTAAGCCATGCACCAAAAGATTTGGGAGTGG
TGGGAGTAGACTTGAAGGCATACTGTAGCATGAGGGGGCTAAATGCAAAATTCTCACCACCGTG
GATTGCCACATCAGCACCCAAGCTGCGTCATCTGCACTTTGGACATCGGATGATACATTAAACC
AAGATTATGGACCCAAATACGCATTTTACAACTTCAAGAACCTAGATGACACCCCAGTCCAAGT
TTAGACTTGCCATGTATGGTAAACATATCCTAGGGGACAACTAGTTTGATGGCTGGCTAGTTAT
ACAGAACTCAAGAAAAATATTTACATCATTCAACAAGCATAGTAAAACTAATATTCTATGATTT
AAACACTTCCAAAAAGTTTTAAACATGTGATTGTTTTTATTCAAACAAAATGGCTTAAACAACA
TTATACTGTTCCCTGTAATTGAATGAGAGTGATACTGTATACTGGTTTCTCTCCCCCTCTTGCC
TAGCAAGGTTAGCAGACAAGAATACATGTTTGGTTTCCACGCTTGATTTTGTTTTGGGGAACAT
AAGAAGGCTTCCCTGGTTTGGAGAAGACAATCTATTTGTCTCTCCTTTCCGAGCAAAGATTTCC
TTGCTCACTATCAAGGCTAGGGAAAGCTAGCCAAAGAGCAAAACATTCCCATGCTCTTTGTGGA
TGAAAAGTGGCAAGCCCATAATTCGTAATGTTTTGAGTTTCAAAAAGTGAAGCATATTATGCCA
GTACTTTAGCATAAGTATAATAAATCTAACCATGGCTTTTTCATCATCATCATCATCATCATCA
GTGCGGCTTGTTTCTGAAATAACTACCAAGTTTAGCATGCCCTCAAAGATTGAGTTGTCAACCT
GTTACAGAAGTCAAGTCAAAGAAACTTATGTGAAAAGCTTTATGGTAGAATTTAACTTTTTTGC
AAAAAAAAATAAAAATATTGCAAATTGATCCTAATAAAATAATTTGCACCGTTAATTCAATCAA
GAACAATCATGGGTCTTTTTCCAGTTCACAATAAATTTCCCCTTCATGCTTTCTTGGTTATGCA
GACTGCATACTAGTCATACTAGTTATACACGTATGTCACATATCACTTTATGTATTTATACAGT
TGACGATTAACCTTTTTCAGTTCATGACTTGTATGGGCACAGCAGGTCGCTAACATAGTCAGGT
CATAAGACAAATAATGAAGGATATTCTACCTACATCAAAAACTGTCTTGCAAGTTCTGCACATA
TGCCTTATACCTTTGCATAACCAAAAAAAGAAAAAAAGAAACCGATGACCAATGGCTCTAATTC
GATGAATCATACTTGTATTGCATGTTTGATCAGTGATAAAGCTTGTAATCTGAACATGGATATA
ACTTCTTTTAGAGTGGAATGAATATTGATTCAATCATAAGACAGCCCTGGGTCAACAAGCACCT
CTTGGAAATTTTGAGGACCTGGCAAGAGTGATCAAATGACTGATCATCTTTCATGTGGTACCCA
ACAATGACTTAATGCCACAAGCTTAAGCAGTTTGCATGGCTGATTAGGTAATGTACTAGAAGAC
TAACCACTAATTAACATCATGTGACCATGGCCCTCATATTACTGGCAGCAAGTGAGGTTTAATA
TTCATTAATAGCTTTTTCAATAAGCAGCCAGAGCACAAAAAGTGAGCCCTTGGTGGATGGAAAA
GAAAAAAAAAACAGCTGAAAAAAAACTGTGATCCAAACAATGGAGGTGGCCAACCTTATTAAAG
TATGAATGATAATTCTCCAATTGTCTAAAACACCACTTATTTATTTTAAGAATAGCACTGTCAA
CCAAACTTAGAGCCATGTTTCCGCCACAGGCTTCCGCTGAACAAACAAAGCTGTTTGTATACAA
CTCTATTTCTTTAGCATCATTATGTAATCGAAGCTTCTGTGTTTGAAGGCATGTGTGCTTAAGT
AGAAGAATTTCCCCAGTTTCAGCAAACTGAAAGAAGGAAAATAATCATAAGAGTTAGTGTGGTG
GGTATTAGAACTGACAAAATGCTCAGAGATCAAAATTGGCACTTTGAATGAAAGAAGGAAACTT
TTCCTCTAAGATAAGACACGGACTAAGCAGAGTAAAGGCGATTTAATTTATCATTGTTCAGAAG
ATAATTAATTGAACGACAACAAACTGTAACTCTTTTTCTTCTGAATAGAAAGACCCTGTCAAAC
AATGTGCTATTGGTATCAAACATGTTGGCACATTATCGGATTGCATATCAGCAGTACCACTTGT
TCATATAAACAAATCTAGGCACTTCAGCAACAAAGGAAATGTAGAGGACTTGATAGGAAGTCTA
TCTATTCACAATGTGCTCATTCTGAATTCTAAAAGGTAAAATCATAAAACAGATAAAACACCCC
AATTAAAGAAGAAAAGGATGATATATAGCAGTAAACAGACCTTCTTGAAAAGCACCCAAGCAAA
GAGTGTGTCATGCAATTTCTGGGTGATACCCAATATAGTCCAGGTCAGCTTTACTGTTTCCAGT
ATTTCATCAGCCTCCTGGATGTAAAATCAAATAACAATATCAGCAACTCAGGATAAAACCGTTG
ACTTACTGTCACAAGGCAGTCCAAGAATGTTTCAGATTTAGTCATTTACTTATTCAACAAAACC
TAGACATTTTCATTTTTAAGCTGACCAACAAGGAAATAATGATGTATAGAGAGTAAAGAAGAGC
AAACCTCCACAAGCTGCCCATCTTCGAGAATATCGAACACGATGCAAAGTAATTTCTCATATAG
TCTAAAGTTGAGATGATAGCTCTGGATCCAATGATAGGTCTCGCCTTTAAGGTTGAATTTCTTT
GGGGCTTCACATAATTTTGCGTTGTATCTTTCAATGATAGTCAATACCTCAACAGGCCCATCAG
GGACACTAACTACCCAATCCTGGAATGATTGCCGGCATAAATATAGAAAGAGCTCAGTATTAGT
ATTAAACCTAATTTGGAAAGAGATCAAACTTGATGTGGCTTCCGAAACACAAGTAAAATTACTT
AACCAATAAGAAAAGATAAGAAACACGAAGATTAGCTCTTGCCTCTGTATCTCTTATCTTAGAG
AGAACTATCCGCAATGTTTCACTCATACCATACTCACGCGATCCTGGGAAGAGAAGTAATTCTT
CGAGAACATTTGCCTGGATATCAAAATTATAAACAATAATTAGGACAAACTCCCATGCTATAGG
CACGAATAAATAAACTTGCTTGCCTGTCTTCTCTGCCACTGCACTCGCAGTCTTTCTGTAGGGA
AATCAGATTTCCCAACAGAACTTAAGAGCTGTAATGATATGCAAGGCACATCAAGTTGCCCTTG
CACGATCCTCAAACTGATATGTCTTAAAGCTCGCCTTGTCAATGTATCCATAGATTCAGAGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021