Detail information of Os04g0602800_circ_g.1


General Information
CircRNA Name Os04g0602800_circ_g.1
ID in PlantcircBase osa_circ_025079
Alias NA
Organism Oryza sativa
Position chr4: 30418620-30419584  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0602800
Parent gene annotation Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of
Yarrowia lipolytica. (Os04t0602800-01);Similar to B0403H10-OSIGB
a0105A11.22 protein. (Os04t0602800-02)
Parent gene strand -
Alternative splicing Os04g0602800_circ_g.2 Os04g0602800_circ_g.3 Os04g0602800_circ_g.4 Os04g0602800_circ_g.5 Os04g0602800_circ_g.6 Os04g0602800_circ_g.7 Os04g0602800_circ_g.8 Os04g0602800_circ_g.9 Os04g0602800_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0602800-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCGCACATACCTGCAATGGCGACCATCGCTCATTGGGATCAAATTTCAGAAGCCCCTTTAGGA
AATCAACCAGTATCACCCGCTCTGCCTTTTCTGTCTctgaggagataggcctgcggctagccag
tgtcctcctccaggattgtgttcaactgcggcagcacgaccaattggctacaccacaaattcaa
cacagaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGGAGATAGGCCTGCGGCTAGCCAGTGTCCTCCTCCAGGATTGTGTTCAACTGCGGCAGCA
CGACCAATTGGCTACACCACAAATTCAACACAGAATAGATTTAAGAAAAAAGAGCCACGTGAAC
ACACAATTAATGCCCCAATTAACATAAGTATATAACAATTTTTCATCAGAGCCTAGAAAGCTTT
ATTGTAAATCACACCAAGTAATGCACCACATCAAATGCATGCACGAAAGAAACTGTCATCATCT
AAAATATTTATTGTAAAGACGAATCAGAAAGTGTAGCAACTGGTTAGGTTGATAGTCAGCACTC
TATATCAGTTTATAACAGTAATGTCTGTGGCTCTTTATCCTAAACTAGGAATATGCCACAGAAA
GCAAGTAGTAGCAATGCAAACTTATTTGATTATGATAACAAATATGCCAGTCATATGTTATTCC
TAACTAAGATATAATTTAACTCCCACATAGAAGAATATCATCATTAAAGATATCAATATTTTCA
ATCAAATATGAGACCTAAGCTTGAGATGAGACCATACTCACAATTTTGGGAGTCTCAGGTATGG
GTTCATATGGACCAGTGAAAGGTTCGCCTGTTATAAATGGATGACATGAAGCCTGAAATAAGAT
TTAATAACAATCAAGTCCTTCCGCATGCATATGGATTCCTTGGAATGAAAAATATGCAAGAATA
CAGAATAAATTGTGTTCATAGGTGCAAGCTATCCAATTTTATTGGTACTGTTAGATGAAAGATT
CACCAGCTTAACCTGAGCATAAAAATAGTTAAATATGAAAATGAAAAAATGCTCCTTATACTTT
TACAGAAATGTGAATGCAATATAACCATACTACGTCGCACATACCTGCAATGGCGACCATCGCT
CATTGGGATCAAATTTCAGAAGCCCCTTTAGGAAATCAACCAGTATCACCCGCTCTGCCTTTTC
TGTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.105526762
Functional Information
Coding potential Y
Potential coding position 30419233-30418628(+)
Potential amino acid sequence MDDMKPAMATIAHWDQISEAPLGNQPVSPALPFLSLRR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017