Detail information of Os08g0318500_circ_g.11


General Information
CircRNA Name Os08g0318500_circ_g.11
ID in PlantcircBase osa_circ_036681
Alias NA
Organism Oryza sativa
Position chr8: 13747309-13751986  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os08g0318500
Parent gene annotation Sec8 exocyst complex component specific domain containing protei
n. (Os08t0318500-01)
Parent gene strand -
Alternative splicing Os08g0318500_circ_g.1 Os08g0318500_circ_g.2 Os08g0318500_circ_g.3 Os08g0318500_circ_g.4 Os08g0318500_circ_g.5 Os08g0318500_circ_g.6 Os08g0318500_circ_g.7 Os08g0318500_circ_g.8 Os08g0318500_circ_g.9 Os08g0318500_circ_g.10 Os08g0318500_circ_g.12 Os08g0318500_circ_g.13 Os08g0318500_circ_g.14 Os08g0318500_circ_g.15 Os08g0318500_circ_g.16 Os08g0318500_circ_g.17
Support reads 1
Tissues pistil
Exon boundary   No-No
Splicing signals   CC-TA
Number of exons covered Os08t0318500-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGATATAGCCTGTTGAACACATTTTCGGTAATCTACAAATATTGCTGGCAAGAAGTGCTCCTT
CAAGAAGTTGTTCACAAAAGCCAATAGCCCATCATTcctccatataggatgcacggcatctttc
atgtgtacgttctaaaaatgtgcgaacatactcaacaagctcagtggcatagttcggcatcaat
tgaaccca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCATATAGGATGCACGGCATCTTTCATGTGTACGTTCTAAAAATGTGCGAACATACTCAAC
AAGCTCAGTGGCATAGTTCGGCATCAATTGAACCCATCCAAGTACCTAAGGAGAATTTGAGAAA
ACTATGATAAATATGATTAGAACTTGCAGACAAGGTAACACATCAATTGTTTGGTAAATACCTC
TTTGGCTATTATATCGACAGCCAAAAGCCCTTGTAGTACAGGACGCCCATTTTCGACTAATGGA
CTATACACTGAGGTTGCATGGACACGCGGTCTAAATGCGGCTGGACCTGCCAAAGGATGAAATA
TCACTTGCTCAAAATGTAAGGACCGTAACAAACAAGGGAAGAATAATTCAGTAGCATCCCTAAG
AAGCATATTTAGGTGGACAACATTGCATTTAATCTGCTGCAAAAAAATATAGTAATGATTCGGT
ATATGCCAAATCGCACTGTTGTTCCTTGTCCAATCTCTGGCAGACTGGCACCAGAAGACATTTT
ACTGAAAAAAAGATCCCAAACATCGCTCCTCTGTCTCTTCCTTTCCTCATCCTTCTGTGACCAG
CTCTCAGCGTACATCTTAAACCCCGATCCCTTTGAATCAACTCGATATACTGCCTATGCTTGCG
TAGCTTGTCCCACATTGAGGAGCAACAATCACATCTTTCTCAGAAAGCTCTGTATGCAGGGATT
CTTCAAGGACAATCATCCGAGCAGTTTAACGATGGCAAGAACCATCTTGGAGAAGATGGCAAAT
GTAACGCGTTTGGTTTGATCCCTTACAAGTTTTGGCAGTACCAAGATTGAATTGAAAAGATGGG
TATGGTTGATGCCAAATTTATGCAAATGTGAGATAGATGATACTCCCTCCGTCCCAAAATATAA
CAACTTTTAGTCATCAGAATTTGTCCCAAAATATAACAACTTCTTCACCAACATTCCCTTCCCA
ACCAATCACAACCCTCCACCATTCACTTTTCCCACCTACCTCCACTACTCATCCAATCACAACT
CTCCACCACTCACTTCAACCTATTTTCTTAATAACCGTGTCCAACCCTAAAACTTCTTATATTC
TGGGACGAAGGGAGTATGTATTACCAAAATCTATACTGTGGTGCAGCCACTTGATCTTTCCTAC
CTCCACCCAGAAAAGTACATAGGTCTTTTATATCCGTCAGATCGACTCTAATCAATGCATAGGA
TTAGTTTTAGGATTCTTTGGAGGAAACACGCAATCATCCAACCCAACCCCCCCCCCCCCTGCAC
GCGCGCCCAGCCGCCCACACAAGCATCTAAGCCTACCAGGATCCCGTCGCCCCCTCGTCCGGCA
ACCGCTCTCCACACTTCCCCTTGACCACCCACCAGGCTCCCTCACCCATTGCATCGCTGCTGCC
ATCGTTGACTCATCCCCATGCTACCCTCCCCATAACCACCGCCGTCGATTGACCCTAGAACTCC
GCCCCATCCTTGCCATCGTCCCTGCTGAATGGTGCACATGGCATCGCCGCCGCCGTTGTTACCT
AATGCCCTGAACAGCATCGTCGCCTACCCTTCCCTGGGCTACCGACATACAACCCCCCCCCCCC
AAAAAAAAAAAAAAAAGACAACCACCACCACCCACTAAGGGCTCACCCTTCTGCCGTTATGCCC
TTCGCTCGAGACACCAGCGAATTGTACAGAAGGGACACCAGTTCGATTCACTTCATTCAGGTGT
GCTTTTCAAATATTTCTGAAACCTACCGTGATCCCCACACAGGATATATATATACGTACATATA
CATATACATATATACGTACATATACATATACATATATACGTATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATTAAAATTGTAAGTCTATATCTTC
TCTTATAGATATCCTGGATAGTGTGCACAGATTGAATTGAGAATTCTGAGATTCAGATTTGTTA
CTAAGGATTGGTCGTTTCAAAAATTCAGAATTAACAATGGAGTTCGGGTCAAATAAATAACAAA
AATGTAAAAGAAGGCATACGCCTATTTTTTGCAGGTTCATGCTATTGTCAGAATACAGCATAGG
ATGGGGAAATCTATCCCTCGTTTGGATGCTGGGGCAAAGAGAAGGTAATTAGCTTGAGCAAAGA
GAAAGAACAATTGTTAAAGGAAATATATGCTGCATCGGGAGGCTCATATGTGGTGCATTGAAGT
AGGGGAAGCTAGAGAGCGAGTAGCGATAGAAGAAGCAACTATCGCCAGAGCAGATGAGAAGTCT
TAGGTGTCTGAATATTGAGGAAGCAAGTATCGCTAGAGCAACTGAAGGGATTTGAATCCTTTCA
ACAATTGCTGTGGCAGGAGTTTAGAAAATTATAGTATTGGTAGGGTCGCTATCGTACCATTATC
AGAATTTGGTAGGATAGCAATACAAATTAGACCATAATGTCCATGGAGCAATTAGGCATGCACA
AAAGTATTATGGAAAATGCAACGGCAATGCTATTTTACAACAAACAAGACTCTTCATTCTTTAC
TGTCTTACAGTTTTTCTTTTCTCGAACACACAGGAGAGCTGCATATCATTATGTGAAAAGAAGA
ATAGGGTAGGAAATCTTTACAAAACCCCCACACACAGCAACACAACAGTTAGAAAAACAAGCGC
ACCCGAGACTTGCAGAGCTATAGTGCAGATTAAGTGTTAACAATCTAAATATGTTTATCTCGAA
TGCTACTAAACAAATTTTCCTGAATAATAAGAAATAATGCAGCCTCTGTTACAGGTAAACACAC
TATTGGAACACAAAACAAAGTATGTTTAAGTGCACTGGTTCAAAGATGCATATAGGGAACACAA
CAGGGGTGAGTTTGGTTTGTACGTCACATTTCCCATGCATTCAATATTCCCATCAATTCAAATG
CTGCAAACACATTATAACATTACCAGTAATCTAATACTCCCCTTAGATGATGGAAACATTTTGG
TTGCTCTAAACGAAACTAGAGTAATTATAGAACAATCTAAACAATGCAAAAATTACCAGTAAGG
TGGTTACTGAAATAGGACCAAAATGTCTGTTGCACTCTGAAAACCACAAAGTAGTTAAATAACA
GTTCGAAATTTCATAAACCAGAAATAAAAACTCGCAATTTGGGACAGCATAATTTGATCTTTCA
GAACTTTGAAGTATAACTATGAACTGCAAATAAAGAATTGAAGTTTACGCCAATACAATTATGA
ATACAGATTAAAGATTAAAAAATAAAAAGTGTTTTTATTCAAATTTCAAAAATTTTGATGATCC
AAATTTAAATTCTCAAGTCAAAATTCTTAAATCATGAATTCAAATTCATATTCAGAATTTGGAC
TTTGTTCATTCTAATCAAGAAATATGAATTCATTGTTCCTCAATTCTTAAACCATGAATTGGGA
ATTCATTTATCATGATAAAAATACATTCCCGAACTTGATATCATGATAAACTAAAATTCTTAAA
ATCATATATAATCTTGTTTGAAATTGAGAAGAATTAATTTTGAAATCTAGGATTTAAAATCACA
ACCTAAAAACAATTTCTAATTTGAATTTTAGTTAAAATGAATATTCATACATCCAATTTTGAAA
AAAATAATAAGGCATTTTTTTACTGAAGAACATTAGAGAATAAAATGATAATTTTGGTTTCTTG
AGTATTTCGTTCTCTTTCAATTTTGAGTGATCAGCAAAACGCTGAGGCAGCTGACCAGAACCTC
GTATCACCTCAAACAAAATCGTTTTCAACATAAAGGATATCTCTACTACTATAAAAGCGCAATC
GTCCTCCTCCCTCCCTCTCAAGTTGCATGCATAACCACCCCATCCTCGATAGAATCAGAAAAAT
CAAACGGTTGGTTAAAAAGAAACCAAAAGGATGGATTGATTAAAAAAAAAACCCGTTAGATCCA
TCCCAGTCTATGGGCCATGCAACCCATCCTTATATGGGCCTGTTGCAATGCACAGGCATGGTAC
TAGGAGAAAAAAGAGGGGGTGGATCAGGGGTGGAATTCCTTAGTATATTCCTGGTTATTTTACC
AGAAAAAATAATCATCACAGATTAGAGCAATTCTCTTAGTGACCCTCTTAGGGTTCCACACCCA
AGTGCACCTAGAGGATGATTCATTATTTAATGACTTTTGTCATGTGTGTACTCAAATACTACAT
AACAAGGTTGTCAAGGTAGCCCATACAAGCAACCCTCCTAGTCACTAAGATTCCTATCGGTGTA
CATCACTCATATGTGAAATAACATAACTATAAAAGATACAGTTTTAATAATGTTACATGCTCCA
TGACTGATTTTGGAGTTCTGCTTCCTTACATGACATAATTGCTCCATGGCTTATCAGAGCAGGC
AACATGCTTACAAGACAATATTAACTACAATATCAATTAATATCTAAACAAAAGAAACTTCTTT
TGAGTATGGAACAAGAAAATTTTCCAGTGACCAATAAAACAATATATAAAATGTTTAATTGCAT
TAGACCATATGTAGGTAGACAACAGATAACTTACTAGATATAGCCTGTTGAACACATTTTCGGT
AATCTACAAATATTGCTGGCAAGAAGTGCTCCTTCAAGAAGTTGTTCACAAAAGCCAATAGCCC
ATCATT
Conservation Information
Conserved circRNAs osi_circ_017765 zma_circ_009512 zma_circ_002647
PMCS 0.1084094
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017