Detail information of BGIOSGA014529_circ_g.13


General Information
CircRNA Name BGIOSGA014529_circ_g.13
ID in PlantcircBase osi_circ_014686
Alias Chr04:29197569_29198268(MH63RS2), Chr04:29197569_29198268(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27433284-27433983  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA014529
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014529_circ_g.1 BGIOSGA014529_circ_g.2 BGIOSGA014529_circ_g.3 BGIOSGA014529_circ_g.4 BGIOSGA014529_circ_g.5 BGIOSGA014529_circ_g.6 BGIOSGA014529_circ_g.7 BGIOSGA014529_circ_g.8 BGIOSGA014529_circ_g.9 BGIOSGA014529_circ_g.10 BGIOSGA014529_circ_g.11 BGIOSGA014529_circ_g.12 BGIOSGA014529_circ_g.14 BGIOSGA014529_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA014529-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGTAATGATATGCAAGGCACATCAAGTTGCCCTTGCACGATCCTCAAACTGATATGTCTTAA
AGCTCGCCTTGTCAATGTATCCATAGATTCAGAGATcctccacaagctgcccatcttcgagaat
atcgaacacgatgcaaagtaatttctcatatagtctaaagttgagatgatagctctggatccaa
tgataggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCCACAAGCTGCCCATCTTCGAGAATATCGAACACGATGCAAAGTAATTTCTCATATAGTCT
AAAGTTGAGATGATAGCTCTGGATCCAATGATAGGTCTCGCCTTTAAGGTTGAATTTCTTTGGG
GCTTCACATAATTTTGCGTTGTATCTTTCAATGATAGTCAATACCTCAACAGGCCCATCAGGGA
CACTAACTACCCAATCCTGGAATGATTGCCGGCATAAATATAGAAAGAGCTCAGTATTAGTATT
AAACCTAATTTGGAAAGAGATCAAACTTGATGTGGCTTCCGAAACACAAGTAAAATTACTTAAC
CAATAAGAAAAGATAAGAAACACGAAGATTAGCTCTTGCCTCTGTATCTCTTATCTTAGAGAGA
ACTATCCGCAATGTTTCACTCATACCATACTCACGCGATCCTGGGAAGAGAAGTAATTCTTCGA
GAACATTTGCCTGGATATCAAAATTATAAACAATAATTAGGACAAACTCCCATGCTATAGGCAC
GAATAAATAAACTTGCTTGCCTGTCTTCTCTGCCACTGCACTCGCAGTCTTTCTGTAGGGAAAT
CAGATTTCCCAACAGAACTTAAGAGCTGTAATGATATGCAAGGCACATCAAGTTGCCCTTGCAC
GATCCTCAAACTGATATGTCTTAAAGCTCGCCTTGTCAATGTATCCATAGATTCAGAGAT
Conservation Information
Conserved circRNAs osa_circ_024939
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021