Detail information of 4_circ_ag.15


General Information
CircRNA Name 4_circ_ag.15
ID in PlantcircBase ath_circ_033404
Alias At_ciR4440
Organism Arabidpsis thaliana
Position chr4: 14248663-14253478  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT4G28860_circ_g.1 AT4G28860_circ_g.2 AT4G28860_circ_g.3 4_circ_ag.4 AT4G28860_circ_g.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 AT4G28860_circ_g.9 4_circ_ag.10 4_circ_ag.11 4_circ_ag.12 4_circ_ag.13 AT4G28860_circ_g.14 AT4G28880_circ_g.1 AT4G28880_circ_g.2 AT4G28880_circ_g.3 AT4G28880_circ_g.4 AT4G28880_circ_g.5 AT4G28880_circ_g.6 AT4G28880_circ_g.7 AT4G28880_circ_g.8 AT4G28880_circ_g.9 AT4G28880_circ_g.10 AT4G28880_circ_g.11 AT4G28880_circ_g.12
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTTCTTGTTACTAACAAAAAGTATTGTCATTTCTACTGCAGGCAGTTCCTGGGTCTAGCAATC
CTCGTGCAATGCCAGTGGACACAAGCAATCATCGGGgaggaactaagatttcacatgaagccca
agtctctgaccgtgtcagaccggctaatgccagtggtccaagcccacagattaataccgctgta
gggaggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGAACTAAGATTTCACATGAAGCCCAAGTCTCTGACCGTGTCAGACCGGCTAATGCCAGTGG
TCCAAGCCCACAGATTAATACCGCTGTAGGGAGGAGTCTGGGTTTTGATCAAGTCCACAAGAAT
GTACGTGCTTATTCATTTGCCTCTTCCAAATAAATGTTGTATCCTGCAACCCTCCCCCTTGTGT
TAGCATCTCATGCCTGCATCTGTGTTGCTTCAGAGTTCTGCATGGTTCTCTGCTTAAAGCTTTT
ACCTGTTTTGCATGGTCAATTGTCATCAACGAGCTCTATATTGTGATATGAACTACATATAGCA
TAAATGATTAAAACACGATACTGATCATCACGAAATATGCTCTTGACCATTATTTTACTGAAAA
CCCATTGCAGATGAACATGCCATCATCCACTTCATTATCTCCTGCGGGTACCTCAAAAAGAAAT
GTCAGACCCGAAACCTCAAATTCTGGGTTTGGGAGCGGGAATAAAACCGGCGGTTGGACTTCAC
CATTCATGTCACCGGGGAAATGATGCAAAAAAAGTTGGAGTATATCATTCATCTGATCTGCTGA
GCAAGATTATGTGTGCCTTTGGGTCTAAACTGTGATTTCTGCAGTGAAAAGCTCTAGACTGAGG
TTGAAGATCTGAATGGAGTTTTTCCATGAACAGCTTACTGTTTGACAAAAGGCATGAAGATTAT
GTTTGCTTTCCTTCAAGATTCTCACAAATGACTGACTTCAACCTTTGTATAAAATCTTGCAACC
GGGCGTGTAATTTGGTTCTTGTGATTCATTCTCCCAAGTTTTCTTCTATAAAACTTTGTTCGTA
TTTCTGTACGTAGTTCCCTGTGTTGGGGCATAACCTGGGTTTGCTGTGTCATCAACATTGTTTG
CAGAAAATCAAGAGCAAAGCATGAGCAGCTTCAGCAGAGATGCCTTCAAAGGCTTGAGTCAAGA
GTTGCTTGTGGCAGGGACATGTCACCATCAAGCTAATGTGCAGCTGACGAGAACGTAAAAGGAT
AAGCTATGGCTAGCTTCTGGAATGCTCCGAGAAACACTTCCCCCTTTTTTTTTCTCTGAATTTC
CTATTCAGTTTAATGGTATTCTGTGTTTGATTTTTCTTACTCGATTTTGTGCATTGAAAAAAAT
TATATCAAAAAGCTTGACTTGATCCAAACATGCATTTTCAATTGCTATTATTAAAAAAAAAAAA
CGTATAAAATTGTAGTCTCAATATTGAAATACAAACACCTAGAATTGATCGATTTGGTAGAGAA
CTAGTTAGTGGATTAAATTTGGGTTGGCTGATTTTCGAGCCATAAACTATTTCGATTCTCAGCT
TTCACACCCGGACTTTTGGGCCTTTAAATTTCCACCATCAACTTTCATATTCCCAAAATTACAT
CATCTATTTTTGGATTCATGCTTAAACATACATTTCCAATTGAACCATTCATTTAACCGGGATT
AACCACAAATCCGCGTTTACTGTACCGCGATTGCGATTAACCCAACTAATACCCAGACCCGTTA
AGAAAACGACGTCGTTTTCATTTCGTTTAACTCATCAAAAAGAGAAAGAAAACGACGTCGTTTT
CATTCTTCTTCTTTAACTCTCAAATCGATTTAGTCGTTCTTCTTTAATCTCGACACTGTGAAAT
TAGGGTTCTTGAGAGAGAAAGACAAAAGGGGATTTGGGGTTTTCTTCTTCGGTTCGAATTTTTG
GGTCTCGATTTGGGTTTCGAATAGGGAGAAATGAAGAATTGGTGGGAGGAAAGATTGATTTACC
AAAGCGATCCAGATGACCCCGATTTCGAACCTCCAGAGAGTGACATTGAAGCCGACGATGGAAG
TGATAGTGGTGATAGCGGAGTCGAGGAGGACGAAGCCACCAGAATCGAGGGAGAGGACGTCGGG
ATAGATGGAGACAGAGCTTCTGATGGAGAGGAAAATAGAGAAGACGATGGTGACATAGCGTCTG
ATGGAGACGTCAATCTAGAAGACGATGGAGACAGAGATGAAAGTCAAAAGAAGAGGACTACCAA
ATCGATTTGAGAGTTAAAGAAGAAGAATGAAAACGACGTCGTTTTCTTAACGGGTCTGGGTATT
AGTCGGGTTAATCACAATCGCGGTACAGTAAACGCGGATTTGTGGTTAATCCCGGTTAAATGAA
TGGTTCAATTGAAAATGTATGTTTAATCATGAATTCGAAAGTAGATGATGTAATTTTGAGGAAT
ATGAAAATTGATGGTGGAAATTTAAGGGCCCAAAAATCCGGGAGTGAAAACTAAGAATCGAAAT
AGTTTATGACTCGAAAATCAGCCAACCCATTAAATTTTCGAACCTTCATCATTTTGCAGACCCC
AAAAACGGAAATCATCAAATCATCCACCGTGCCAGCGTGACATTACAAAATCACGTAAATACCC
TCGTGTTTGTTTATAAGGTAAAAAAAGATTGGCGGACCCAAAATGGTGCAGTAGTTAGGTGTAC
AAATTTTTTTTTGAAGGATCACTACTACGGCTCAAACAAGCCTGGGTCCATGTCACTACCACCG
ATGTCAGTCAAACAAAAATAATAATATATGTTTTTAAGTTCCTCTAATTTCAATCTTCTAAACA
ACAACCCTAAATCCTTATCTCTATCCTTGCGCTTGATCCAGATTCGGTTCTGATTGGAGCTGCC
ATGGAACGCATCATCGGCGGCAAGTACAAGCTCGGACGGAAGATCGGCGGTGGTTCGTTCGGAG
AGATTTTTCTAGGTTTTGTGTTCTCCTCTGTTCTTGTCCCTTTGGTTTTCCGAGTTTGCTTTTT
TATTTGAAATTGACGCTCTTCTCTTCTGTTTGTTGTTTTCGCAGCTACGCACGTCGATACCTTC
GAGATCGTAGCTGTTAAGATCGTAAGTCCCAGCTCAATTTGCCTTGAGACGAATTGAATCCATC
CAATCTGGAGATTTGATTTGGATCTGCTATGTCTCTTAATTGATTTTGTTTGAATTGCTTTACT
CTAAAATTGAGCAAGGTTTTAAACTCGGTGCTTTTTAGCTGCAATATATTCTTCAAGCTAACAC
TTGTTTTTAATTCAATCATTTTCTCTTGCAGGAGAACAGTAAAACAAAGCATCCTCAACTTCTC
TATGAAGCTAAGCTATATAGAATTCTTGAAGGAGGAAGTATGATTCTCTTTCCTCTCTTTTCTC
AGTTGTTGGACATTGGAGGGATTCATTAGCAGTACAATACTAATTTTTATGTTATGTGTCAGGT
GGAATTCCGCGCATAAAATGGTTTGGAGTTGATGGAACAGAGAATGCTTTAGTGATGGATTTGC
TCGGTCCAAGTCTCGAAGATCTTTTCGTCTACTGTGGGAGGAAATTCTCACCAAAGACAGTCTT
GATGTTGGCTGATCAAATGGTATGGCATGACTTTCAACTATTCATTAGGCTATTTATAATATCT
GTTGACTTATACATTGATTATCTAATGTGCTTCCGATTTTCTTATCCCGCTGTTACAGCTAACA
AGAATAGAATTTGTACATTCGAAAGGATATCTGCATAGAGATATTAAACCCGATAACTTCCTCA
TGGGCCTAGGTCGGAAAGCAAATCAGGTATATTTCTGCAACTTCTTATCTTCATCAGATGCCAT
AAGTAGAGTATGGTATGATTGATAAGTCTCATTTTTCAGGTTTATCTAATTGACTTTGGACTTG
CCAAAAGATATCGGGATGCCAACACCAACCGCCACATCCCTTACAGGTATTGTGGCCTTGGTTC
AATATACAGATTGTAAATGATCTATCTGTTTTTAAGTTTTACGGTCACGTTAATCATTATACAA
CTTATTTCCTTTATTCGGCTATATTCAGGGAAAACAAGAATTTAACAGGAACTGCACGATATGC
AAGTTGCAATACACATCTTGGAATTGGTAAGAAATGCTGGCATTCTTTATCCTTATGTAAAAGT
AAATCGCTTTTGCTCATATTTTGGGTTCTCTTCACAGAGCAAAGTCGACGGGATGATCTAGAAT
CGCTGGGATATGTGCTTCTGTATTTCCTAAGAGGAAGGTGTGTTGTCTTTTTGAAAGAAACTAG
TTAACATTATGTTATTTCGCAGGGTATTTCTATTCCTTGTTTTTAGAGATTTACTTAACTGTTT
TTTGTGTTCCTCATTTCATGAACGTCCTTTTCTAGTCTTCCATGGCAGGGTCTTAAGGCTGTTG
ACAAGAAGCAAAAGTATGATAAAATCTGTGAGAAGAAGATATCAACTCCCATTGAGGTATGTTT
CCCTATTGTGTGATTGATTCTTTTTTTGTTAATCCTCATTCGACTAAGTATATATCGATATCCC
ATTGCAGGTGCTATGCAAAAATCACCCTGTGGAGTTTGCATCATATTTTCATTACTGCCATACA
CTGACATTTGATCAGCGCCCAGATTATGGATTCTTGAAGCGGCTTTTTCGTGATTTATTTTCGC
GGGAAGGTAGGTACTTTGGATAAAGACATCTCTTCATCATTCATAGTTCACTCAGCTGATAAGG
TTCACCGGCATCATCTACCTACCTCACTATTATATGTTCTCTTTTGCAGGATATGAGTTCGACT
ATATATTTGACTGGACTATCATAAAGTATCAACAAGCACAGAAATCTAGAAATCAGTCTCAGGT
ATAGTTTTCAATGTTTTCTCAATCTTAATTTGCTGCTGTGTCACCTTTCTTGTTACTAACAAAA
AGTATTGTCATTTCTACTGCAGGCAGTTCCTGGGTCTAGCAATCCTCGTGCAATGCCAGTGGAC
ACAAGCAATCATCGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.611711306
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015