Detail information of Os01g0390400_circ_g.7


General Information
CircRNA Name Os01g0390400_circ_g.7
ID in PlantcircBase osa_circ_001797
Alias NA
Organism Oryza sativa
Position chr1: 16490741-16492208  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os01g0390400
Parent gene annotation Similar to Met-10+ like family protein. (Os01t0390400-01);Nuclei
c acid-binding OB-fold domain containing protein. (Os01t0390400-
02);Nucleic acid-binding OB-fold domain containing protein. (Os0
1t0390400-03)
Parent gene strand +
Alternative splicing Os01g0391100_circ_igg.1 Os01g0388000_circ_g.1 EPlOSAG00000043644_circ_ig.1 EPlOSAG00000043644_circ_ig.2 Os01g0388500_circ_igg.1 Os01g0388500_circ_igg.2 Os01g0388500_circ_igg.3 Os01g0390300_circ_g.1 Os01g0390300_circ_g.2 Os01g0390300_circ_g.3 Os01g0390400_circ_g.1 Os01g0390400_circ_g.2 Os01g0390400_circ_g.3 Os01g0390400_circ_g.4 Os01g0390400_circ_g.5 Os01g0390400_circ_g.6 Os01g0390400_circ_g.8 Os01g0390900_circ_g.1 Os01g0390900_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0390400-01:3
Os01t0390400-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAACATGTGCATCCAGTCACACAAGTAG
TAATGAATTTGCCCAATGATGCTGCAGAATTTTTAGttattggaattctagattatcaacagaa
agacagaggcttgttgaccatgttttcaaaaattctgatgttgtttgtaagttctagccctgct
ttttatta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 329
Transcript exons: 16490741-16490814,16491634-16491776,16492097-16492208
TTATTGGAATTCTAGATTATCAACAGAAAGACAGAGGCTTGTTGACCATGTTTTCAAAAATTCT
GATGTTGTTTGTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGGTCA
AATATGTCTATGCGAATGACCTAAACCCCACTGCAGTGGAGTACCTTGAGAGAAACATTGTTCT
TAACAAGCTCGAGAGAAAAATCGAGGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATA
TACTCAAGCCAACATGTGCATCCAGTCACACAAGTAGTAATGAATTTGCCCAATGATGCTGCAG
AATTTTTAG

Genomic sequence TTATTGGAATTCTAGATTATCAACAGAAAGACAGAGGCTTGTTGACCATGTTTTCAAAAATTCT
GATGTTGTTTGTAAGTTCTAGCCCTGCTTTTTATTATAACAGAGGTTTTTGTGGCCTGTGGAAT
CAGGATGACAGTCTACATTGTTTTGTAACTTTGTTCCCTTTCAAGATATCGATCTTTTCTATTT
AGAGCAATTTACACTGTGTTTGCAGAAAAGATAAACACATAGTCATGTGCCACTACTTGTGCAA
ACATGTGTACTATTTACTTTTGGTATTGACCCTGATACCTCCTCAGGGGCAGCGGCAATTTTTA
GAAAGTATACATAGCAATGCACCATAGGTTGGGCAAGTATTTGTTCGCTGTTTAGTGTTGAAAT
ATTGTGTCTTGCAGTGTTTCTGCATTGGTATTGTATTGTTCTGGTAGCTTGTATAAACATGACA
GCAAAAGATTGACTGCCATTTTATTCCTGCAGTTCTCTTCCTATTCACATGAAAAGCATTTGCT
GTCTTCATTATGAACATATATTAAATATGATAATCAGTGTCCATGCATGTTCTTCATCATGCTC
AGCTTTTGTGGACAACCAAATGGTCCATGTAGAAGAAAATAATGTAATCATCATTTACGGGGTG
TGTTCTGATGATCACATAAATCAGTATTTGTGTATATGTACTGAATAATCGTATTTTACAACTC
CTGTAATGTAATATGGTCGAGCATCTGGGTCGAGTATGTTTTATGATGTATGCACCCCTGGTTC
TGGAGTAGTTCACAGTAACTATTACATTTTTAATTTCATCTTCTCTTAAGCTTCACAATATTTA
CTTGATTATAACCTTTTCCGTAGTGAGTGAAAGATCAATTGCTACCACATCCTTTATGCAGGTG
ATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGGTCAAATATGTCTATGC
GAATGACCTAAACCCCACTGCAGTGGAGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAG
AGAAAAATCGAGGTAGTTCCAACTATGAGATAAGCGAGATAGCACTCATGTCTTTCTATTTATT
AATAAATTTCCTGTGATGGCTTTCAGATTTTATTGTAGCTTACATAAAGTTCATTGTTAGCAAC
CTAGCATCAAAGCTTACCGCTGTCTCAGAAAAGCATTTGGTTGGAAATCCTTTTTGCACCACTA
GAAATTAGAAAATACACCATTTTAGTGCTTATGTTCGTTTGTTAATGACTTGTTTCAAGTGTAT
CTAATGGTTTAGTGTGGATTTTTTTCTCCGTCTTTATGGCTCTTGTTGATATTTGTTCATTGTT
TTGTCGAACCAGGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAAC
ATGTGCATCCAGTCACACAAGTAGTAATGAATTTGCCCAATGATGCTGCAGAATTTTTAG
Conservation Information
Conserved circRNAs osi_circ_002069*
PMCS 0.32794231
Functional Information
Coding potential Y
Potential coding position 16492107-16491660(+)
Potential amino acid sequence MDARRFISSIYSSQHVHPVTQVVMNLPNDAAEFLVIGILDYQQKDRGLLTMFSKILMLFVMCSL
VLVQ*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017