Plant Circular RNA Database

Detail information of Os12g0288600_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os12g0288600_circ_g.7
					
						ID in PlantcircBase
						osa_circ_011155
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 11067779-11070603  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, circseq_cup
					
						Parent gene
						
							Os12g0288600						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os12t0288600-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0288600_circ_g.1 Os12g0288600_circ_g.2 Os12g0288600_circ_g.3 Os12g0288600_circ_g.4 Os12g0288600_circ_g.5 Os12g0288600_circ_g.6 Os12g0288600_circ_g.8 Os12g0288600_circ_g.9 						
					
						Support reads
						2/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0288600-01:3

General Information
CircRNA Name	Os12g0288600_circ_g.7
ID in PlantcircBase	osa_circ_011155
Alias	NA
Organism	Oryza sativa
Position	chr12: 11067779-11070603 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, circseq_cup
Parent gene	Os12g0288600
Parent gene annotation	Conserved hypothetical protein. (Os12t0288600-01)
Parent gene strand	-
Alternative splicing	Os12g0288600_circ_g.1 Os12g0288600_circ_g.2 Os12g0288600_circ_g.3 Os12g0288600_circ_g.4 Os12g0288600_circ_g.5 Os12g0288600_circ_g.6 Os12g0288600_circ_g.8 Os12g0288600_circ_g.9
Support reads	2/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0288600-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCATGCAGTAATTATGACTCAAGCAGAAACCTTTTTAATATCGCTTTGAGTGTTACAATCATCC
TCCTTTGTTTCGCTATTCAACTTGGTTTGGTTGTCCctgctgactcaaagcgaatgtggccagg
cctaaccacaactggaacaatatcatccgatgtatcagattcttcctcatctgcttcatgcctt
acaaatgg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 344
Transcript exons: 11067779-11070603
CTGCTGACTCAAAGCGAATGTGGCCAGGCCTAACCACAACTGGAACAATATCATCCGATGTATC
AGATTCTTCCTCATCTGCTTCATGCCTTACAAATGGCAAGCTCGAGTTGTTTTGATTGCTTGAT
GGGGACGGCAAAACATCTCGGTTGTTTGACGATGGACAATCAGCCACGGTTGGTTGTTCTTGAC
AGTGCTCTTTCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAGTTGTCTTTTGAGTTTCTTACG
CCGAGCACTTCTAGATACCTTTTTAATATCGCTTTGAGTGTTACAATCATCCTCCTTTGTTTCG
CTATTCAACTTGGTTTGGTTGTCC
						
					

						Genomic sequence
						
							CTGCTGACTCAAAGCGAATGTGGCCAGGCCTAACCACAACTGGAACAATATCATCCGATGTATC
AGATTCTTCCTCATCTGCTTCATGCCTTACAAATGGCAAGCTCGAGTTGTTTTGATTGCTTGAT
GGGGACGGCAAAACATCTCGGTTGTTTGACGATGGACAATCAGCCACGGTTGGTTGTTCTTGAC
AGTGCTCTTTCTGCAAAAATATAAATTGAAGATAAATATATTTGTTTAACACTATTTGTCCCTA
CTATGGAGATAAGACTATCAGGTAGCTACTCTGTTCTGAGCTGGAGGAAGAGAAGTAGATGGAT
AGCAGCAAAAGATTCAGTATCAGAGGAAACAAGATTACAGGGAGTCGGAAAGCTTTCATGCCAC
AGTGAGACATACCAATGAAGAAGGCAATGCCACAGTAGTGGAAACTTATAAAAGCTGTACAATT
TATGAAAAGAATAGAGTTTTCATTGGGGGAAAAAAAGAAGGAAGCCCATATGGGATTGCAACTT
GAAAGTTGATTGAACCAGCCTATATATTTTCCAATTGTTGCAACCAATCCAGATGTTCTTCCAT
CTATAAAATCCACAGCATTATGCCCTTGTAGTAGGGATATAAAAATATCCTATAAATCAAGAAA
TAAGATACAGACACATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAG
TTGTCTTTTGAGTTTCTTACGCCGAGCACTTCTAGATACCTGGTAAAACACAGGACAGCAAAGT
GAACTTTATGCATGTGATAACTAAAATAAAATGCACATGCAGAAAAGCATGACTTGTTAATTGA
GTCCTATATATCATAATATCACAGGTAAATTTGAGTGTTGCTACACTGCACGTGAAGTGTGAAA
TGTCAATTATAGGAAATTATACTTGTGGCGTGGTCAGCAGTCAGAATTGTGCATGGAGCTTGCT
TTTTCAAAGAATTTCTTTATGCCCTTTTTTCTATAGACTAAAATTGGCAAACAACTACTTCAGA
ATGAAACAGAAGAAGCTCATTAAATTTTCTGTGGTTTTCTTTAACTAACTATTCCATAAAGACA
ACTGCAAAACAGTCCAATTCTAAACAATAAGTTAGCCAATGGATACATTAAGGTGAGCTTGACA
TTAGAGCAGCCCTTTTAAAAGCACTGAATTAACTTTTTACTATAAATCAATTAAACAGGAAAAT
ACATTTTAACTCCAATTCATGTGATTGTAATGCTTGGTACTTCTTTTAATTTGTTGTGCACATC
GTACAATTTCCATTCTTGTTCTCATGATTTGAGTGGTTCTGGTACTTGAAATAAAAATCAATGA
AAAATTACAAATCTTATACAAGCACCAACATCACTCAATAGATGAATCAGTTACACAAAGATTG
ACAAAATTATTTTTGTAGCAATCAAAGTGTGCCCATTCCCGTTGCTATCCCTAACCAATAGGGC
AGGAGGAGAAGAGGGAGCCATAGGAGGAGTTGGGATCAACGAGTAGTTGCAGAGTGAAAAATAG
TGCTGTATTTAATCATGTGCCCTCCAAAATCATCGATTCGTCATACTGAACACAACCACAAAGA
GCCCAAACCAAATTGCTAATCCAAATCATTCCAATACCAACCGAATGGAGCCCAAACCACAAGA
CAGTCCAAATCCAACACAGTAGCACGTGTGAGTTGGCAAGGAGCTGAGGGGACAGAGAAGCTGC
AGGTGCAAGAAGTAGCCACACCAGTGAGGATGACAAAAATGAGAGCAAGGGGTGAGCATGTAGG
AGTTGTGAGGAGCTACAGCAGCGCAATGGCATGTAGCAATGGTGGAGGTGGTGGGGAGATGCAG
ATGACACGATTTCCACCAGTAAAAGGGCGCAGGATGATTCGGTTTCAGACATCCAGATGAGCCA
GTGTAGGGATCTATCACAAGGTAAGGATAATAAGGTCACATGTAACATGAGTCGGCATTAGTGA
CAATGACAGAAGTGATAAATACAGGGATGGACACACCTTTTGGAGCTAATAAAGTGATTATGTC
ATTTTGGTGCTACAAATCTAAAATCGTGGACTTTCAACACCACATATCAATTTGCCTTAAAGAT
CTTAAACATATACAGAATAAAAAAAACACGAGAAATAGTGTTCACGTGCGTTATTGATGGCGTA
TTTGCATGTGAACATAACTCAAAGCAGTTGCAAACTATTTCAACAAAATGATACATGAGAGGGC
ATTTGAAGGTCAGGAAGTTATATGGTTTTTGTCCCATTAAAAAATCCTTTTTAGCCAAAGCAGA
TAATTAACTAACTAGGTTCAGCACCACGCAGCAATGCAAAACAGGTCTGGTACTGGGCATTAAT
CACTATGATAAGAAATAAAAGCATGCAAAAACAAAGAGAGAATTGATAAATACTACCTCCATCC
TCCGTCCCAAAATATAAGGATTTTTAGGGTTGGACATGGGTATTGAGTAGGTGGAATTAAATGG
GGAAGGTTGTGATTGGTTGACAAGAGGAAGTACATGGAGAATTGGATGGTGGAAGGTTTCGATT
GGTTGAGAAGGGAATGTAGCTGATCAGCTGCTATATTTTGGGACGGAGGGAATAGATTTTTATT
TCTTTTTAAAAGAAAGACTCTCCTTTTGGTTTACATACAAAAAGAATCATCATCCATAGAGAAA
AATAAGCCCAAAAGATTTCAGATTGTTAAAACAGTAATCATGCAGTAATTATGACTCAAGCAGA
AACCTTTTTAATATCGCTTTGAGTGTTACAATCATCCTCCTTTGTTTCGCTATTCAACTTGGTT
TGGTTGTCC
						
					

			
		

Sequences
Splice junction sequence	TCATGCAGTAATTATGACTCAAGCAGAAACCTTTTTAATATCGCTTTGAGTGTTACAATCATCC TCCTTTGTTTCGCTATTCAACTTGGTTTGGTTGTCCctgctgactcaaagcgaatgtggccagg cctaaccacaactggaacaatatcatccgatgtatcagattcttcctcatctgcttcatgcctt acaaatgg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 344 Transcript exons: 11067779-11070603 CTGCTGACTCAAAGCGAATGTGGCCAGGCCTAACCACAACTGGAACAATATCATCCGATGTATC AGATTCTTCCTCATCTGCTTCATGCCTTACAAATGGCAAGCTCGAGTTGTTTTGATTGCTTGAT GGGGACGGCAAAACATCTCGGTTGTTTGACGATGGACAATCAGCCACGGTTGGTTGTTCTTGAC AGTGCTCTTTCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAGTTGTCTTTTGAGTTTCTTACG CCGAGCACTTCTAGATACCTTTTTAATATCGCTTTGAGTGTTACAATCATCCTCCTTTGTTTCG CTATTCAACTTGGTTTGGTTGTCC
Genomic sequence	CTGCTGACTCAAAGCGAATGTGGCCAGGCCTAACCACAACTGGAACAATATCATCCGATGTATC AGATTCTTCCTCATCTGCTTCATGCCTTACAAATGGCAAGCTCGAGTTGTTTTGATTGCTTGAT GGGGACGGCAAAACATCTCGGTTGTTTGACGATGGACAATCAGCCACGGTTGGTTGTTCTTGAC AGTGCTCTTTCTGCAAAAATATAAATTGAAGATAAATATATTTGTTTAACACTATTTGTCCCTA CTATGGAGATAAGACTATCAGGTAGCTACTCTGTTCTGAGCTGGAGGAAGAGAAGTAGATGGAT AGCAGCAAAAGATTCAGTATCAGAGGAAACAAGATTACAGGGAGTCGGAAAGCTTTCATGCCAC AGTGAGACATACCAATGAAGAAGGCAATGCCACAGTAGTGGAAACTTATAAAAGCTGTACAATT TATGAAAAGAATAGAGTTTTCATTGGGGGAAAAAAAGAAGGAAGCCCATATGGGATTGCAACTT GAAAGTTGATTGAACCAGCCTATATATTTTCCAATTGTTGCAACCAATCCAGATGTTCTTCCAT CTATAAAATCCACAGCATTATGCCCTTGTAGTAGGGATATAAAAATATCCTATAAATCAAGAAA TAAGATACAGACACATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAG TTGTCTTTTGAGTTTCTTACGCCGAGCACTTCTAGATACCTGGTAAAACACAGGACAGCAAAGT GAACTTTATGCATGTGATAACTAAAATAAAATGCACATGCAGAAAAGCATGACTTGTTAATTGA GTCCTATATATCATAATATCACAGGTAAATTTGAGTGTTGCTACACTGCACGTGAAGTGTGAAA TGTCAATTATAGGAAATTATACTTGTGGCGTGGTCAGCAGTCAGAATTGTGCATGGAGCTTGCT TTTTCAAAGAATTTCTTTATGCCCTTTTTTCTATAGACTAAAATTGGCAAACAACTACTTCAGA ATGAAACAGAAGAAGCTCATTAAATTTTCTGTGGTTTTCTTTAACTAACTATTCCATAAAGACA ACTGCAAAACAGTCCAATTCTAAACAATAAGTTAGCCAATGGATACATTAAGGTGAGCTTGACA TTAGAGCAGCCCTTTTAAAAGCACTGAATTAACTTTTTACTATAAATCAATTAAACAGGAAAAT ACATTTTAACTCCAATTCATGTGATTGTAATGCTTGGTACTTCTTTTAATTTGTTGTGCACATC GTACAATTTCCATTCTTGTTCTCATGATTTGAGTGGTTCTGGTACTTGAAATAAAAATCAATGA AAAATTACAAATCTTATACAAGCACCAACATCACTCAATAGATGAATCAGTTACACAAAGATTG ACAAAATTATTTTTGTAGCAATCAAAGTGTGCCCATTCCCGTTGCTATCCCTAACCAATAGGGC AGGAGGAGAAGAGGGAGCCATAGGAGGAGTTGGGATCAACGAGTAGTTGCAGAGTGAAAAATAG TGCTGTATTTAATCATGTGCCCTCCAAAATCATCGATTCGTCATACTGAACACAACCACAAAGA GCCCAAACCAAATTGCTAATCCAAATCATTCCAATACCAACCGAATGGAGCCCAAACCACAAGA CAGTCCAAATCCAACACAGTAGCACGTGTGAGTTGGCAAGGAGCTGAGGGGACAGAGAAGCTGC AGGTGCAAGAAGTAGCCACACCAGTGAGGATGACAAAAATGAGAGCAAGGGGTGAGCATGTAGG AGTTGTGAGGAGCTACAGCAGCGCAATGGCATGTAGCAATGGTGGAGGTGGTGGGGAGATGCAG ATGACACGATTTCCACCAGTAAAAGGGCGCAGGATGATTCGGTTTCAGACATCCAGATGAGCCA GTGTAGGGATCTATCACAAGGTAAGGATAATAAGGTCACATGTAACATGAGTCGGCATTAGTGA CAATGACAGAAGTGATAAATACAGGGATGGACACACCTTTTGGAGCTAATAAAGTGATTATGTC ATTTTGGTGCTACAAATCTAAAATCGTGGACTTTCAACACCACATATCAATTTGCCTTAAAGAT CTTAAACATATACAGAATAAAAAAAACACGAGAAATAGTGTTCACGTGCGTTATTGATGGCGTA TTTGCATGTGAACATAACTCAAAGCAGTTGCAAACTATTTCAACAAAATGATACATGAGAGGGC ATTTGAAGGTCAGGAAGTTATATGGTTTTTGTCCCATTAAAAAATCCTTTTTAGCCAAAGCAGA TAATTAACTAACTAGGTTCAGCACCACGCAGCAATGCAAAACAGGTCTGGTACTGGGCATTAAT CACTATGATAAGAAATAAAAGCATGCAAAAACAAAGAGAGAATTGATAAATACTACCTCCATCC TCCGTCCCAAAATATAAGGATTTTTAGGGTTGGACATGGGTATTGAGTAGGTGGAATTAAATGG GGAAGGTTGTGATTGGTTGACAAGAGGAAGTACATGGAGAATTGGATGGTGGAAGGTTTCGATT GGTTGAGAAGGGAATGTAGCTGATCAGCTGCTATATTTTGGGACGGAGGGAATAGATTTTTATT TCTTTTTAAAAGAAAGACTCTCCTTTTGGTTTACATACAAAAAGAATCATCATCCATAGAGAAA AATAAGCCCAAAAGATTTCAGATTGTTAAAACAGTAATCATGCAGTAATTATGACTCAAGCAGA AACCTTTTTAATATCGCTTTGAGTGTTACAATCATCCTCCTTTGTTTCGCTATTCAACTTGGTT TGGTTGTCC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_010417 zma_circ_003213 zma_circ_010303 						
					
						PMCS
						0.098480348

Conservation Information
Conserved circRNAs	osi_circ_010417 zma_circ_003213 zma_circ_010303
PMCS	0.098480348

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							11067867-11070582(-)
						
						Potential amino acid sequence
						
							MKQMRKNLIHRMILFQLWLGLATFALSQQGQPNQVE*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	11067867-11070582(-)
Potential amino acid sequence	MKQMRKNLIHRMILFQLWLGLATFALSQQGQPNQVE*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2016;Chu et al., 2017

circRNA

Detail information of Os12g0288600_circ_g.7

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