Detail information of Zm00001d025291_circ_ig.3


General Information
CircRNA Name Zm00001d025291_circ_ig.3
ID in PlantcircBase zma_circ_010303
Alias Zm10circ00052, zma_circ_0003233, GRMZM2G168166_C2
Organism Zea mays
Position chr10: 112931774-112936285  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d025291_circ_ig.1 Zm00001d025291_circ_ig.2
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTTTCAAGCATCAAAGCAGATGAGGAAGAATCTGATACATCGGATGAGATTGTCCCAGTTG
TGGTTCGGCCTGGTCACATTCGCTTTGAACCAGCAGgaacaataaaaccgaattgaaatgtgag
gcaaatgtggcagactacaatgctcaaagtgatacaaaaaaggtatgcatgactcataatgcgt
ctcttgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACAATAAAACCGAATTGAAATGTGAGGCAAATGTGGCAGACTACAATGCTCAAAGTGATACA
AAAAAGGTATGCATGACTCATAATGCGTCTCTTGATATGTTGAGTATTTGATTCTGCTTGATCA
TATCTAGTTTCTTGATTGTGCGCTATGCTCACTAATTTGTATTCATGGATGGTGATTATCCTGA
GATATAATCCATTGTGATGCTGATGGCTAATCTATTTTACCTCATTGCAACAGTTGTATCATGT
CAACTATCTTTAATGTCTACCTTTCAATGCTATCTTTTCATGTGTGCCTTTTTTTTCTCGTATC
GAGTAGTTCGGTATTTTTTTCATTCTGCTGTTTTATTTAGAAAACGAAATGCAAGCAATGGGCA
GCTCCTGCCGGAGTCCTACTTTTCTGGGCTTGTCAAGCAGGTCTGCTTGATATACTGGTATAAA
TGGTGTCCCAAATGTGTGCATAATAGGAATTAGGAATGAACATTATATTATACTAATAATAAAA
CATGTTTTGGGCCTTTTTATTAGGCTTTCAATCCTTTTATATTTGTTGCCTTCATTTATATCAA
AAGTTTGTTGCTAGTATGCCCTTTCTTAATCAGGGTGAAAACTAACATTGAAGGGCGGGCCTGG
TGCAGTGGTAGAGCCTACCGTCTGTAACCGGAAGGTCCCGGGTTCGAGCCCCAGCCTCTGCATA
TTATGCGGGTAAGGCTTGACGCTTAAAGATACCCTTCCCCAGACCCCGCACAGTGCGGGAAGCC
TACGGCACTGGCTACGCCCAACTGTTTGTTGGTCTGCTGGGATTAGTTCATTAAAAGAGGTTTT
CACTTAGCAGAAGTACAAAATGAAGTACAACAGATGTTCTTGAAAATTGTCGGAGAAACATCAA
GTCCGTCTTTGTTTTACAATTAGTTTAGTGAAACACAGTTATATTAATATTACTTTAAAAAATG
TAGTGGAACTGTGTGCATGTAATCTATGAGGTAGTCGTAGTCTGCTATTGCTAACTATCCAATA
CCTCCAAAAAGACTGCCATAAATGTGTTTCTAATTAAGCTAATATAAAACGCGATGCCAGACAA
AACTAAGTTAGTAGTCATGTGTTACTGCAATAATTCTTGAATCTGCTCTTAGCCCATGTCTTTT
AACACTTAAGATGTTACCTATCTATGCACTATGCACTTCTGTTGTTCCAGAACCCTTTCACATA
TACTTGATTCAGGTTATCCTTTGTGGTTTTGTTTATTGTATTGGTAAGGCTAAGAATTTGGTTA
TCTTTTGTAGTTATGTTTATTGTATTTGTAAGGCTAAGTTTTTTCTTCTCATAGTCCTATCTTG
TTCATTCCTGCATGCTGAACCCCATGTGTCCAGCTTCACTAAGATTTGATTCTGGGCTTACCTC
TGTTCACAGTTGTGCCAAAATATTTTAATTTTGTTAACATATGCATCTCTCTTTGCTTTGTATT
TTTTCCTTGTCAGTTGGAGAGTAGAAGTGCTCGTCGCAAGAAAATTAAAAGGCTGATGAGACAG
AGAGGAAAATTACAAACAGATAAGGTATTTTTTCCTCGAACGGCGCAGGAGAGTTTTGTCCTTT
TGTCAAGGAATACTGATTCATTTTGTCAATAAATACTGAAATGCACTACACTCAAAACACACAC
AACCCACACCGAAGTAAGTTCACTTTAATAATACCAATGGTACACAATTTCGTTGGGACAAGGT
TCCAAAAAGCGCTAGGTGCTAATCAAGCGGTGACCTTCTGCCTAGAGCTTAAGTGTGCTTGGGT
GTTCCTAGGCCCACGACCTAAGTGTTTTGTACCATAACACAAGTTCAGAACTCAAAGCATTCTG
TCAAAAGATATTAGACAGTTTTTGGTGGACAAGGTGGGATGTGACGTGACTGGTTCTGTCCTAG
TTTTCTGGGTTAGGATGATCCCATCTGTGCTTGGTTGAGGGATGGAGAGTGCGAGGATGGATGG
ACCGTTTTGGATTCGTTGGTTGCCGTCAATGTGGGCCGCAGATATCAGCCACCTTTTACTTCTT
CCTCCCTTCCTTTGTTCGTACACACCAGCCCGCCTCCATCTGCTATGGGCGTCTCAGCCTGCCC
TAGCTGCTTCCACCTGGTGGTGCACCTCCCACCCACCTGCCCATAGTGACGACGGCCCTCCTCA
GCATTGACCTGTATCTGTGCTGTTCGCTGCCCCTGCCTAGGCGCCACCTCCCTACTGCGCCACT
GCATTGCCCACCTGCTCCCTGTTCACATGTCTAGAGGATGCCCAATTGCCCACACAGATGGACT
CAAAGAGCATCGGGAGTGGACACACGCGTCCTCTAGATTTTGAGGTACAGGGATGTTCCCCATC
TGGATGGAGTTTTCTCTTTGCTGGTGTCCCCCTAGGCCCCTACATACCTTATTCCCTTAGCGAA
GGAGACACTATGGTGGGGTGTCTGATGATTGGTGAAGTTGTAGGAGTTGCACATGTGGACATGC
AGGGGTTGAGGTTTAGAATCTTGGTTTATGTGAAAATCTTGGTGGAAAAAATTACTGCTGTTTA
TGGCAAAACATTATTCTCTATTGTATTCCGGTTGTTGGATGCATTGACTTTCATGGTTTGCACT
TGGGACACCATTCCAATAGCCGACCGAATGTCCCTTTTTTTTGCAATTTAGCCCTTTTGCAAAA
GATTTTTACAAATATACCCTTTTTGGTTTGAATTTAGGAAATGGACCCTTACCTCGGCGCTGTG
ATCATTGGCGCCAAGGTTACATGGCTCGACACCAATATCTGTGGCGCCGAGGTCTCGGTCCCGT
GCGCTGATCTGGCGCTTACGTGGCAGGGGTCGCCGCCGTGATTATTGGCGCTGAGCTCGGCGCC
GAGGTCGGCGTCAAAGATCTTGGCGCCGTCGAGAGAACGAATGAAGAAGTACGACCGAGCTAAT
ACATACGTAGCTCATGCCCATATAGATATATTTAGATACAATTTGTTAACGAATATTTATCTTG
TGAAGATAGAACAATTTATTTTGATGAGTAGATGCAATGTTCTAGATTTAGGAAACCCTGTTTT
ACCTCCAAAAGAAATATATTCTCAGTTCGTGAGAACAATTTGTATTATAATATTTGTGAAAATA
GAAGAGTACATCATATGCATACTACGTTAAGGTCACATGTATATCATATAATATAGAAAATAAA
AGGAAAACAGAATCAAAGAAAACGAATAATTAAAATAATTATTTAGAGAAAACAAAGAACAAGA
GGGGAAACAAAAAAGAATAACAAATGCTATTAAATACATAGAAAATTAAACAAACTAAAATACA
ATACTGAACAAAACATAAGGGAAAAATGATAAAAAGAGAACACTTCTGGGCAATGCATCTGTTG
ACATGAAGAGACATTAGCAGTGTGACGGCTGGGATGCAGGCACAGGCGTGCACATGCAGGTGCA
GGCTAATAAATGCTAAGATACGGATCTCGTGAGCACATGCAGGCGCATGCGTGCATCACAGTTT
ACACACGTACCAACGCAAGCCATCGTTGCTCGGCGCCGAGATCTGTGACACTGACCTCAGAGTT
GAGATTCGTGGTGCCGAGGTCGGTGTCATGACCATTGGCGCCTAGGTCGTGCCACGTAGGCGCC
GGTTCAGCGAGCGGAAACGAGCTCTCGACGCCAATATAATTAGTGCCGAGACATGTTACCTCTG
CATCAATGATGATGGCGCCGAGGTGAGGGTTCATTTCCTGAAATAAAACAAAAAAGACGTATTT
GTTAAAGACTTTCGTGAAAAGGGCCAAAATGCAAAAAAGACGGACCGAATGCTATATTACTGTT
AGGGGGTGAAAACGATCGGAAACAGTCGAAAATGATATTGTCTATACGGAAACGATTTCTGGTC
GGTCGGAAATTTACCCGGTTTCATAATTAATCTAGGATGTGTTTGGTTTGAGGTCAAAGTGGGA
CGAGGCGGGGGCGACACCGTTCCCTCGATTTTTTGGGATCACGCCGTCACCAAAAACTACTCCG
TGGTTTATCTCGCCCCTACGTGACTCTCATCCAAACACTATAGAAACTGTGGCCGCCCCCTTCC
ATCCCTTCATGTACATCCAACCAAACACACTCCTACTTGTTGGTGACTACAATACGTTGTTGAT
AGATATTTTGAAATTCAAATTTTGAAAACGGTAATTTTCGGAAACGATATTATCTTTACGAAAA
CGATACGATTACGAGGTCCCGATTACGGTTTTCAGCCCTAACTGTTGTGCACTTGTGCTGATCA
ATATATTCATGTATGTATACTGCAGAATGTGCATGAAGATTCACTAATAGCTCCTGATTTTCCA
TCATCAAGCAATCAAGATGGCTTGCCTGTCCCATCAAGCAATCAAAATGGATCACATGTTCATT
TTTCAAGCATCAAAGCAGATGAGGAAGAATCTGATACATCGGATGAGATTGTCCCAGTTGTGGT
TCGGCCTGGTCACATTCGCTTTGAACCAGCAG
Conservation Information
Conserved circRNAs osa_circ_011155 osi_circ_010417
PMCS 0.13281137
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress