Detail information of Zm00001d025291_circ_ig.2


General Information
CircRNA Name Zm00001d025291_circ_ig.2
ID in PlantcircBase zma_circ_003213
Alias circ1516
Organism Zea mays
Position chr10: 112931773-112936285  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method CIRCexplor2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d025291_circ_ig.1 Zm00001d025291_circ_ig.3
Support reads 32
Tissues seedling leaves
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTTTCAAGCATCAAAGCAGATGAGGAAGAATCTGATACATCGGATGAGATTGTCCCAGTTG
TGGTTCGGCCTGGTCACATTCGCTTTGAACCAGCAGggaacaataaaaccgaattgaaatgtga
ggcaaatgtggcagactacaatgctcaaagtgatacaaaaaaggtatgcatgactcataatgcg
tctcttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAACAATAAAACCGAATTGAAATGTGAGGCAAATGTGGCAGACTACAATGCTCAAAGTGATAC
AAAAAAGGTATGCATGACTCATAATGCGTCTCTTGATATGTTGAGTATTTGATTCTGCTTGATC
ATATCTAGTTTCTTGATTGTGCGCTATGCTCACTAATTTGTATTCATGGATGGTGATTATCCTG
AGATATAATCCATTGTGATGCTGATGGCTAATCTATTTTACCTCATTGCAACAGTTGTATCATG
TCAACTATCTTTAATGTCTACCTTTCAATGCTATCTTTTCATGTGTGCCTTTTTTTTCTCGTAT
CGAGTAGTTCGGTATTTTTTTCATTCTGCTGTTTTATTTAGAAAACGAAATGCAAGCAATGGGC
AGCTCCTGCCGGAGTCCTACTTTTCTGGGCTTGTCAAGCAGGTCTGCTTGATATACTGGTATAA
ATGGTGTCCCAAATGTGTGCATAATAGGAATTAGGAATGAACATTATATTATACTAATAATAAA
ACATGTTTTGGGCCTTTTTATTAGGCTTTCAATCCTTTTATATTTGTTGCCTTCATTTATATCA
AAAGTTTGTTGCTAGTATGCCCTTTCTTAATCAGGGTGAAAACTAACATTGAAGGGCGGGCCTG
GTGCAGTGGTAGAGCCTACCGTCTGTAACCGGAAGGTCCCGGGTTCGAGCCCCAGCCTCTGCAT
ATTATGCGGGTAAGGCTTGACGCTTAAAGATACCCTTCCCCAGACCCCGCACAGTGCGGGAAGC
CTACGGCACTGGCTACGCCCAACTGTTTGTTGGTCTGCTGGGATTAGTTCATTAAAAGAGGTTT
TCACTTAGCAGAAGTACAAAATGAAGTACAACAGATGTTCTTGAAAATTGTCGGAGAAACATCA
AGTCCGTCTTTGTTTTACAATTAGTTTAGTGAAACACAGTTATATTAATATTACTTTAAAAAAT
GTAGTGGAACTGTGTGCATGTAATCTATGAGGTAGTCGTAGTCTGCTATTGCTAACTATCCAAT
ACCTCCAAAAAGACTGCCATAAATGTGTTTCTAATTAAGCTAATATAAAACGCGATGCCAGACA
AAACTAAGTTAGTAGTCATGTGTTACTGCAATAATTCTTGAATCTGCTCTTAGCCCATGTCTTT
TAACACTTAAGATGTTACCTATCTATGCACTATGCACTTCTGTTGTTCCAGAACCCTTTCACAT
ATACTTGATTCAGGTTATCCTTTGTGGTTTTGTTTATTGTATTGGTAAGGCTAAGAATTTGGTT
ATCTTTTGTAGTTATGTTTATTGTATTTGTAAGGCTAAGTTTTTTCTTCTCATAGTCCTATCTT
GTTCATTCCTGCATGCTGAACCCCATGTGTCCAGCTTCACTAAGATTTGATTCTGGGCTTACCT
CTGTTCACAGTTGTGCCAAAATATTTTAATTTTGTTAACATATGCATCTCTCTTTGCTTTGTAT
TTTTTCCTTGTCAGTTGGAGAGTAGAAGTGCTCGTCGCAAGAAAATTAAAAGGCTGATGAGACA
GAGAGGAAAATTACAAACAGATAAGGTATTTTTTCCTCGAACGGCGCAGGAGAGTTTTGTCCTT
TTGTCAAGGAATACTGATTCATTTTGTCAATAAATACTGAAATGCACTACACTCAAAACACACA
CAACCCACACCGAAGTAAGTTCACTTTAATAATACCAATGGTACACAATTTCGTTGGGACAAGG
TTCCAAAAAGCGCTAGGTGCTAATCAAGCGGTGACCTTCTGCCTAGAGCTTAAGTGTGCTTGGG
TGTTCCTAGGCCCACGACCTAAGTGTTTTGTACCATAACACAAGTTCAGAACTCAAAGCATTCT
GTCAAAAGATATTAGACAGTTTTTGGTGGACAAGGTGGGATGTGACGTGACTGGTTCTGTCCTA
GTTTTCTGGGTTAGGATGATCCCATCTGTGCTTGGTTGAGGGATGGAGAGTGCGAGGATGGATG
GACCGTTTTGGATTCGTTGGTTGCCGTCAATGTGGGCCGCAGATATCAGCCACCTTTTACTTCT
TCCTCCCTTCCTTTGTTCGTACACACCAGCCCGCCTCCATCTGCTATGGGCGTCTCAGCCTGCC
CTAGCTGCTTCCACCTGGTGGTGCACCTCCCACCCACCTGCCCATAGTGACGACGGCCCTCCTC
AGCATTGACCTGTATCTGTGCTGTTCGCTGCCCCTGCCTAGGCGCCACCTCCCTACTGCGCCAC
TGCATTGCCCACCTGCTCCCTGTTCACATGTCTAGAGGATGCCCAATTGCCCACACAGATGGAC
TCAAAGAGCATCGGGAGTGGACACACGCGTCCTCTAGATTTTGAGGTACAGGGATGTTCCCCAT
CTGGATGGAGTTTTCTCTTTGCTGGTGTCCCCCTAGGCCCCTACATACCTTATTCCCTTAGCGA
AGGAGACACTATGGTGGGGTGTCTGATGATTGGTGAAGTTGTAGGAGTTGCACATGTGGACATG
CAGGGGTTGAGGTTTAGAATCTTGGTTTATGTGAAAATCTTGGTGGAAAAAATTACTGCTGTTT
ATGGCAAAACATTATTCTCTATTGTATTCCGGTTGTTGGATGCATTGACTTTCATGGTTTGCAC
TTGGGACACCATTCCAATAGCCGACCGAATGTCCCTTTTTTTTGCAATTTAGCCCTTTTGCAAA
AGATTTTTACAAATATACCCTTTTTGGTTTGAATTTAGGAAATGGACCCTTACCTCGGCGCTGT
GATCATTGGCGCCAAGGTTACATGGCTCGACACCAATATCTGTGGCGCCGAGGTCTCGGTCCCG
TGCGCTGATCTGGCGCTTACGTGGCAGGGGTCGCCGCCGTGATTATTGGCGCTGAGCTCGGCGC
CGAGGTCGGCGTCAAAGATCTTGGCGCCGTCGAGAGAACGAATGAAGAAGTACGACCGAGCTAA
TACATACGTAGCTCATGCCCATATAGATATATTTAGATACAATTTGTTAACGAATATTTATCTT
GTGAAGATAGAACAATTTATTTTGATGAGTAGATGCAATGTTCTAGATTTAGGAAACCCTGTTT
TACCTCCAAAAGAAATATATTCTCAGTTCGTGAGAACAATTTGTATTATAATATTTGTGAAAAT
AGAAGAGTACATCATATGCATACTACGTTAAGGTCACATGTATATCATATAATATAGAAAATAA
AAGGAAAACAGAATCAAAGAAAACGAATAATTAAAATAATTATTTAGAGAAAACAAAGAACAAG
AGGGGAAACAAAAAAGAATAACAAATGCTATTAAATACATAGAAAATTAAACAAACTAAAATAC
AATACTGAACAAAACATAAGGGAAAAATGATAAAAAGAGAACACTTCTGGGCAATGCATCTGTT
GACATGAAGAGACATTAGCAGTGTGACGGCTGGGATGCAGGCACAGGCGTGCACATGCAGGTGC
AGGCTAATAAATGCTAAGATACGGATCTCGTGAGCACATGCAGGCGCATGCGTGCATCACAGTT
TACACACGTACCAACGCAAGCCATCGTTGCTCGGCGCCGAGATCTGTGACACTGACCTCAGAGT
TGAGATTCGTGGTGCCGAGGTCGGTGTCATGACCATTGGCGCCTAGGTCGTGCCACGTAGGCGC
CGGTTCAGCGAGCGGAAACGAGCTCTCGACGCCAATATAATTAGTGCCGAGACATGTTACCTCT
GCATCAATGATGATGGCGCCGAGGTGAGGGTTCATTTCCTGAAATAAAACAAAAAAGACGTATT
TGTTAAAGACTTTCGTGAAAAGGGCCAAAATGCAAAAAAGACGGACCGAATGCTATATTACTGT
TAGGGGGTGAAAACGATCGGAAACAGTCGAAAATGATATTGTCTATACGGAAACGATTTCTGGT
CGGTCGGAAATTTACCCGGTTTCATAATTAATCTAGGATGTGTTTGGTTTGAGGTCAAAGTGGG
ACGAGGCGGGGGCGACACCGTTCCCTCGATTTTTTGGGATCACGCCGTCACCAAAAACTACTCC
GTGGTTTATCTCGCCCCTACGTGACTCTCATCCAAACACTATAGAAACTGTGGCCGCCCCCTTC
CATCCCTTCATGTACATCCAACCAAACACACTCCTACTTGTTGGTGACTACAATACGTTGTTGA
TAGATATTTTGAAATTCAAATTTTGAAAACGGTAATTTTCGGAAACGATATTATCTTTACGAAA
ACGATACGATTACGAGGTCCCGATTACGGTTTTCAGCCCTAACTGTTGTGCACTTGTGCTGATC
AATATATTCATGTATGTATACTGCAGAATGTGCATGAAGATTCACTAATAGCTCCTGATTTTCC
ATCATCAAGCAATCAAGATGGCTTGCCTGTCCCATCAAGCAATCAAAATGGATCACATGTTCAT
TTTTCAAGCATCAAAGCAGATGAGGAAGAATCTGATACATCGGATGAGATTGTCCCAGTTGTGG
TTCGGCCTGGTCACATTCGCTTTGAACCAGCAG
Conservation Information
Conserved circRNAs osa_circ_011155 osi_circ_010417
PMCS 0.025733173
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b