Detail information of Os12g0288600_circ_g.1


General Information
CircRNA Name Os12g0288600_circ_g.1
ID in PlantcircBase osa_circ_011149
Alias NA
Organism Oryza sativa
Position chr12: 11063749-11068517  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os12g0288600
Parent gene annotation Conserved hypothetical protein. (Os12t0288600-01)
Parent gene strand -
Alternative splicing Os12g0288600_circ_g.2 Os12g0288600_circ_g.3 Os12g0288600_circ_g.4 Os12g0288600_circ_g.5 Os12g0288600_circ_g.6 Os12g0288600_circ_g.7 Os12g0288600_circ_g.8 Os12g0288600_circ_g.9
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   AT-AA
Number of exons covered Os12t0288600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAGATACAGACACATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAA
GTTGTCTTTTGAGTTTCTTACGCCGAGCACTTCTAGataccttgggaagtcgtgttaggggata
caggctgtcaaaatctaaaggttcactgctagacttccctttctcagcaacaatcttttcactt
gctgatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACCTTGGGAAGTCGTGTTAGGGGATACAGGCTGTCAAAATCTAAAGGTTCACTGCTAGACTT
CCCTTTCTCAGCAACAATCTTTTCACTTGCTGATCCAACATGACTGCTCTCACCAACCTTTTGA
TTACTGGCCAAACCAAAATCATTATCACTAGTCTTAGAGTTGCCAGCCACATGGTGGTTAACTT
CAGTGTCAGTTCCAGTTATCCTCCCATGATAGCTGATATCAGAGCTTTTCTTGTTTGAGTTGTC
CATTCCCCACTTCTGACCCTTCTTTTTGCTTGTAGTTCCACTCCACTGGAAAGTTGTCTGGAAT
AAGAAAAATCAAAACAATTACATACCAATTTGCATAATTTTACTAGTATTAATATATTTATTAA
AGGGAAGTAAATCACCACTTCTATTTAACTAATGAATAATTTATTTTAATTCAGGTTTCTTAAA
TTTCATCAACACTGCCTCAATTGGAATTAGATGACTAGATGTCGATTTAGTCAAAAGCACAATG
ACCAAGGTGGATCTTAACTCTTTTACTTTTGACATGCTTACCCCTATCAAATGTGATTTATCTC
TGAATAATGGTCCTCCATAGTACTGGTCACCAGCTATGATTTATCCAATCCTAGGGCAAGAGCA
TACTAAAGTGTAGCTTTGCTCTTAAATAGCTGTCACCGGGTTCAATTGGATAAACAACATTAAC
ACCTGTTGCATTTTATAGGGCCTATTTCTGAAAATGAAACCTAGAAACTTAAAGGAAAAAGTAC
GAATTACCCCCCCCCCCCAACCCGAAAACCAGATATGACTCACCCTGAACTTTCAATGACGGAC
GAATTACCCCCCTCAACCCAATCCAGAGCGGTTTTATCCTACGTGGCGTACGCGTGGCAACCCA
GTCAGCATTTTTTTAAAAACATAGTGGGGCCCACCTATCATATACTCTCTCCCTCTCCCGGCGA
GCACGGCAGCCCGGGGCAGCTCCAGCATCGTCGTAGTCGTGGCACACAGAGCCGGCGGAGTGGG
ATGCGGAACCGGCGGCGGCAGCGTGGGATATAGAGCCAGCGGCGGCGCGGGGAAGGAAAAGGAG
GAGAAAGAGGAGAAAGAGGTGGGACCCGACGGCGCACGTTGCCGGAGAGCACGGAGAGAGTGTG
CGCCGAGATCGGGGACGGCGCAGGGGCTGGCGGTGGGCAGCAGCAGGAGATCGAGATGGTGGAG
GCGGCAACGTCATCCAGCTCAAAAACGTCGTCTCCTCCTCTCGAGCTCATCTCCATTTTCAAAT
CTCTCTTTCTTGCTTGAGGCGAGCCATGGCGGAGCTGCCGCTTGCAGCGGGGCTGCTCGACCTG
CGCCCCTGCAAGCTCGCCCCTCCCCCTCCCCCGCCTCTCTCCCTGTCTCCCCCTCCCCTCCCCG
CCGCTCCCACTCCACCATCACCACCACCGCCACCGCCTGCCGCCCCTCCCCTCCCCTCGCCGAC
GAGGAGCTGCCGCTGGCGGACGCCGTGGCTCCCGAGACCGTTGTCGCTGCACCTGAGGCCCGGG
ATGGCGGTGGAGAAGGGGAGGTGACGGCGATGGCGACGGCGACAGGTTTGGACGCGAAGGAGGT
GGCAAGTGGAGTGGAGGCGACAGCGACCTCGGATGGCTACACCACACAGGACCACGACGACGAC
GACGCTCGAGCCACCGCGGGCTGCCGTGCTCGCCGAGAGAGGGAGAGAGAGTGAGAGAGGGGAA
GAGGGGGGAGAGAGAGAGTATATGACATGTGGGCCCCACTATGTTTTTGTCAGGTCTTCAACTG
ACAAGATGGCGAAGGACAACAAGGATGAAGAGGAGAACCCTGAAACTGAAGAAGCAGGGAAGAA
GGAGGCTGAAGCTGAAGGAGCAGAGGAGGGAGAACCTGATGAATCTCAAGACAGGGTGGCGCCA
AGACTCAAGAAAGCAATGGGCCAAAGGCGTTCTACAAGGGCTAGCAGGCCCAATCCACGTTACC
ATGGGTCCCAGTGGGTGTGAGTATTGTAACTACTGCCAGTTGTCTGTAAGCAACTTGTACACGG
CAACTGTAAGAGAGAAAGGGATAAATAGGGGAACACAACGAATTGGAAGGCGCTTTTTGGCAAC
TTGGAGGCGTAGGCGGCGGCGGCTCAACCCTGTCGGGTTGGTGCGAAATCTATCAATTGAGTTG
CCAATTCCCCCTTGTTCTTGTGTGATTTGGAGTCCAGTTTCTGAATTCTGAGTTAAACTGAGTG
AACACCTGACAGTTTTAAAAAAAGAAAATCCTGACTGGGTTGCCACGCGTATGCCACGTTGGAT
AAAACCGCTCTGGATTGGGTCGAGGGGGTAATTCGTCCGGTATTAAAAGTTCAGGGTGAGTCAT
GTCTGGTTTTCAGGTTCAAGGGGGAATTCGGCCAACCGTGATAGTTCGGGGGAGTAATTCGTAC
TTTTTCCAAACTTAAAACATCTATAAGAGCAAAACCAATATCCATAAAATGTGGCAAAACCAAC
ATCAGTCTTTTGATTAGGGCATTTACTTTTTGCCACTTTTAAGATGTAAAGATTTGCCACTCAC
AGTATATGACATGTGGGCCTTCATGTGCTATGACATGTGGGCCCAGTGGCAAATCCTTAATTGC
CACTTATAAGAGTGGCAAATAGTTAAATATCTCCCTAAAATGACATCTAAGTATCTAACAATTA
TGGAAGAAATATGCATTTACGTAGCCCCAAATATTTCCTAGTCAATCCACAACTACCCCCACAA
TCAAAGCTATCACTTCCCTAAAATATCTCTAAAAACAAATTCATAAAATGGAAGTCACAACAAA
TTCTATTATTTACATGCTAATGAGCAGATAGCAAATATAGTGGAGGTGGAATATAAAATAAAGT
CTTGATAATTTCATGCAGTGGCCTAACTTACTAACTGTTGCAAAGGAAATGCATCATTAAATCA
GTTATTATATAATTAAGAATGAGAGACAAGAGGCACATCAATAAACCTGTATTTCCTTCACCGG
TGATTTATCTGATTCTCCGCCTAAAATCAAAAGAAAATTACTTTATATTGAGCTGTCTTACATG
CAATAAATGAATATTACCAACTGAAGATGTGTAGTGATGTGGGTAACACAATAGTAATGATTCA
ACAAGAAAACTGTCATAGGTAGTGGGCCGAGGGGTCGAGGCCCAAGAACATAAATCAGAAAAGC
ACACAAGCCGGACATAAATAACAGCATAACAGTCTCAAATATTCACTTGTTTGAAGACCTCTAA
ACAAGAATGCACAAAAGATGATTTCAGGTGCAAATCTCCGAGAGCTGTAGTATACACATAATAA
AATCCCCATAGGCTGAAAGAATATGAGATGGAGAGTTATATATGTACACTAGGTTTAGCTGGGA
ATATAGGACTATTTCTCTTATTTATTTGCCAATAGAGCTCAAATTCCTGGTTTTATTTTCAAAT
TCTCGGACCAGGAGCAGCATGGAATAGTTTGGATATGCTCCAACGCACCATTTACATCTATATA
ACGATAAATAGATTAATGGTTCAGAATACAATTTACTGGTGATTTTCAACCAAAACATAATATT
TTCAGTCTGGATATTCATGCATAAACAGCTAGAATTGTTCTTGGAGAAAAGAATGAAATGTTTT
TATATATTTTTCACATACTTCTCTGTTTCAAGCATAAGGTAAGGCCAGAAAAAGATGACCTTAA
ATTTTGAAGGTAGGACACAACTAGCACAGACAAATTAACCAGAGGAGAAGACCTGAAGAATATT
TCTAAAGATGCCACTATCAACATACCAAATATATGTGTTGTTTGATACATACAAATGTCCTAAT
GCTTACATGTCTACTTGGACAAGTATGATGGCATTTGTGCATGGTAAATTAACACGGTAGTCAG
GGTAACTCTGGTTTATCTTTTTTTTTCCTGAACAGGACAGTGTTTGTTTTCTGTCTGTGATAAA
CAATGGATTGCAATGCGGAAAATAATATTATCATAAATCAGATTCTTGCTGGATGAAGATACCT
GCTGACTCAAAGCGAATGTGGCCAGGCCTAACCACAACTGGAACAATATCATCCGATGTATCAG
ATTCTTCCTCATCTGCTTCATGCCTTACAAATGGCAAGCTCGAGTTGTTTTGATTGCTTGATGG
GGACGGCAAAACATCTCGGTTGTTTGACGATGGACAATCAGCCACGGTTGGTTGTTCTTGACAG
TGCTCTTTCTGCAAAAATATAAATTGAAGATAAATATATTTGTTTAACACTATTTGTCCCTACT
ATGGAGATAAGACTATCAGGTAGCTACTCTGTTCTGAGCTGGAGGAAGAGAAGTAGATGGATAG
CAGCAAAAGATTCAGTATCAGAGGAAACAAGATTACAGGGAGTCGGAAAGCTTTCATGCCACAG
TGAGACATACCAATGAAGAAGGCAATGCCACAGTAGTGGAAACTTATAAAAGCTGTACAATTTA
TGAAAAGAATAGAGTTTTCATTGGGGGAAAAAAAGAAGGAAGCCCATATGGGATTGCAACTTGA
AAGTTGATTGAACCAGCCTATATATTTTCCAATTGTTGCAACCAATCCAGATGTTCTTCCATCT
ATAAAATCCACAGCATTATGCCCTTGTAGTAGGGATATAAAAATATCCTATAAATCAAGAAATA
AGATACAGACACATCCAGCAACAATTTACCTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAGTT
GTCTTTTGAGTTTCTTACGCCGAGCACTTCTAG
Conservation Information
Conserved circRNAs osi_circ_003395
PMCS 0.093793566
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017