Detail information of 5_circ_igg.5


General Information
CircRNA Name 5_circ_igg.5
ID in PlantcircBase ath_circ_041544
Alias Ath_circ_FC3609
Organism Arabidpsis thaliana
Position chr5: 15517280-15521015  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRI, CIRI-full, circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_igg.3 5_circ_igg.4 5_circ_igg.6 5_circ_igg.7 5_circ_ag.8 AT5G38747_circ_g.1
Support reads 7
Tissues root, aerial, inflorescences, whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA
TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGtagttttaattgttcagggtttgactca
aaccgtttgagagcttggtgtttacttgcaaccacattcttggattctctaacacaaggttgta
aggctgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 163
Transcript exons: 15517280-15517360,15520934-15521015
TAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACA
TTCTTGGATTCTCTAACGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGAT
TAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAG

Transcript length: 197
Transcript exons: 15517280-15517390,15520930-15521015
TAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACA
TTCTTGGATTCTCTAACACAAGGTTGTAAGGCTGAATATCGTGTGAATAGAGAACATACTTGTT
GGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGCTG
AATAG

Transcript length: 199
Transcript exons: 15517280-15517396,15520934-15521015
TAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACA
TTCTTGGATTCTCTAACACAAGGTTGTAAGGCTGAATATCGTGTGAATCAGATGAACATACTTG
TTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGC
TGAATAG

Transcript length: 207
Transcript exons: 15517280-15517385,15520915-15521015
TAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACA
TTCTTGGATTCTCTAACACAAGGTTGTAAGGCTGAATATCGTGGCACGTAAGAGACGTAGAGAA
CATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGT
CTCGCGGCTGAATAG

Transcript length: 1593
Transcript exons: 15517280-15521015
TAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACA
TTCTTGGATTCTCTAACACAAGTGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACA
AGAATATCAACTAGCCACGAACTCCTACTTCTTAAAAATGGGTGTGTTCGGCATTCTAAATCAA
TGTCACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAAGATGGTCTCCTGGAAG
ATTTGGCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAA
ATTGATTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGTAGTTTTAATTGTTCAGGGTTTG
ACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACATTCTTGGATTCTCTAACACAAGT
GGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAGAATATCAACTAGCCACGAACT
CCTACTTGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAAGATGGTCTCCTGGAAGATT
TGGCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATT
GATTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGTAGTTTTAATTGTTCAGGGTTTGACT
CAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACATTCTTGGATTCTCTAACACAAGGTTG
TAAGGCTGAATATCGTGTGAATCAGATAAGGAATAACTATTTTAACTTATCTTGAATCAATATA
CAATTATATTAATCGAAATAAGCTAGAGAAAGGTTTATTTGTCTGTGGTATAAGCAGTGGCATA
AGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAGAATATCAACTAGCCACGAACTCCTACT
TCTTAAAAATGGGTGTGTTCGGCATTCTAAATCAATGTCACAAAGGAGACAAGCGGTAAGAACC
ACCAAACCCCATTGACGAAGATGGTCTCCTGGAAGATTTGGCACGTAAGAGACGTAGAGAACAT
ACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTC
GCGGCTGAATAGTAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTA
CTTGCAACCACATTCTTGGATTCTCTAACACAAGTGGCATAAGTTGCTGGAAGAACTTGCACGA
TAGAGTAAAACAAGAATATCAACTAGCCACGAACTCCTACTTATCGCTGCTTGACATTGTTTGA
CAATCCACTGGTCGACTCTCTTCACACAACTTACAATGAGCTCAAGCTTAAAAATGGGTGTGTT
CGGCATTCTAAATCAATGTCACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAA
GATGGTCTCCTGGAAGATTTGGCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAAT
GATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAG

Genomic sequence TAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACA
TTCTTGGATTCTCTAACACAAGGTTGTAAGGCTGAATATCGTGTGAATCAGATAAGGAATAACT
ATTTTAACTTATCTTGAATCAATATACAATTATATTAATCGAAATAAGCTAGAGAAAGGTTTAT
TTGTCTGTGGTATAAGCAGTGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAGA
ATATCAACTAGCCACGAACTCCTACTTGTAAGTTGCCATTTCCAAATCTCAAGATAATTCTATT
GGATCGGACAATTTGCCTTTGGTTATGTATGTATTGCTGGTCTTGTATACATTTGCACTGATGG
AACACTGTTATTTGTAAACCGTTTTGGATTTTGTTAGCTTAAAGCACCGCAATCCGTAGCTGTG
AAAAAATGTGAGAGATCAAGTTCTAGAGAAAAACCAAAAGCTAAGCAAGATTCAGATTTGTGGA
AGTAAAGCTTTTGCATGATAATTCAATAAAATCATATTCAGGTCTTGGTTTCTTTCTATGGTTT
GGAACTTATATAGTATGTTCTACTAGTTTTTGTTGTCTTCTCAAATCGGACGCAAATAATGTCT
CGGCGTGCCTCTCTTATATGGATACACCATTCTGCTTATTTCAGATCTATCGCAATGGAGCATT
AAAATGGTCGTGCGTCATATTTGCGTATGTTTCTTCAATCTTTCTTATTTCTTTTATGCTTAGT
CTTTCGACTTACTTTCTCTTCTCTTCTTCAGACGTAGAAGATTATATTAGTCTCTCAAAAACAA
ATATTTTGTTTGAGTACTGTACTGATCAAACACCCATTGGTTTGCTTCACTTTTCACATTTCAT
TTTACTTTGATGCAGCCATTCGAGTCCAAAGTCAAGATCTATTTAGAGCAATCAAAATACACAT
TTTGAAAAGAAGTAATTGTTTAATTTTGTTATTGAGAATTTACTTGAAGTTTTGTGTTTTCTTG
AATTGGGAATTTTTTTTTTGCAGGTCTTCTTTCATCCTTGCACGGTGAAGAACAAAGACTCTGC
TTCCCTTTCCAGGTTTCACTTTGATTTTTATCAGATATTTGTCTTTGTGCTAATATATGGTTAT
GAAGTTCTACTGTTTCAGATGGATTTCGTTAATAAGTGTTCATGGGATTAATACAACAATCTTC
AGCATTAATACAATTTTTCTTTTCTTTCACTATAAAGGATTCTTATTCGTTTGGTTGTTGAAAG
ATACCAAGAACTCTCATCAAAACTAGAGTACAATTTTCCATTGAAGTAGCAAGAGTAGATCTAT
GGAGGTGCTTTCCAGGCATGTTTTTACTATAACTTAATTTCATTTGTTTGATCCAACTTCAAAG
CTTCATTGCTATAACTAATTTTTTCAAAACATTTCAGGATTTTGAAGTAACGTGAAGCTGAATA
TTGAAAATATGCAAAGACAAAAAGGTAACATATAGTTTTGACATGATATCTCTAACGATTATGC
CACTTACATATCCATTAATTAGTATTCAATAAGTAACTTTGCATCCGAAACGTATATAACCATC
CTAGTACTATGTTACAACTTCTTAACTAACAATTGGAGTTCAGGGTGTAAAGAAAGATCAATCC
TTTTATTTGGGATGCTTACTGTCCCTTTTCGGTTCGAATTACATAGTTTCAATGAGCGTCCAAG
AAATTTGATTGGGATTTTCGCAGGCTCGAGCGGGAATCAGGGAGGTTCACTTCCATTGACTTAC
ATCGACAGCAGAAGGCAGTAGTCAAGGTGCTCTCCTGATTAGGTGATGAATCTTCAACCTTACC
AACAAATGTCTTTTTTACCCTTTCTCTTTATACTAATTTTATTTTCCCAACAATGACCTTATCA
AAAAGGTGGTGCTCTCGATAATTGACAAGTGTGGTCTTAGGTTGTTGGCTGTTGCTCTCGTTTG
ACATCGATACTCATAGTTTCAGTCTTCTTTTGTTTTTCTTTACTGCGTGGAAACAAATGTTCAT
TTGTTAGTGTTTTTATTTCCCTCCTTAGGTGGTGCTAGAGAAAACGAAGGAAAGCCTAGGTGCA
TGGTGCAACATATGGTAATTTGTTGGATTGTTGCCCCCAAGACATGAAAGTACTGAAACCATTG
GAAGGGCTTTGACTCTCGGTGTTAACATCAAGATGATCACTGGTGAATTTGCTCACCCATTGAT
CGTGTTGTAATAATAATACACCTTTGCCATTTTCCACTAACATTCTATTGGACGACGTAGGCCA
GATAACCAGTTGTAAACTTGGAATGGGAATAAACATGTATCCATCTTCGGCTTTTCTTGGTACG
CACAAGTGGTAGGAACCAACAAACCCCATGGATGAATATGTCTCTCAAGTCTCAATGGTACATG
TCATGAATATCTTTCAGTTGTCTTTGCGAGAACCAAATTGTCCTAAAATAGAGTTTCTGACACA
GGTTGTAAGTTTTGTCACGTAAGAGACATGGAGAACATACCTGGCAGAGAATCAAGTGAATTCC
TCCAAAGAACTGATCAGATTAGAAAGAGCTAGTGTCTTGCGGCTGAATAGGTAAACATTCTTAG
AATAAAACTACTAGCAAATTGGAAATATGTTATACCCATCTTTCTCAGATTTTTTCAGAATGGG
AGATATGTAAAGGAAGGAACAAATACTTTTGACAAACTATTTAGGCCATCGTCAAAGATTTTGC
AACATACACATCCATTAATTAGTATTCAGTAAGTAATCTTGCATCTATATAAATAACCAACCTA
ATACTTTGTCAGTAACAATCTCACTAAATGTTTGTATAATTGTGTATGGTAGGTAGACAGTGGA
AAGAAGTGTCTAAAGGAAACTTGAACCCAGATGTCTGCATAGAGGTAAATCCACATAAGATCTC
ACACCCTCGGCCAAGTTCACATCACACATTAGAATTATAGAACCTTGGTAAGTAGAATAAACCT
ACTTAACTACCTATGATAGTTTTCAACTTAAAATCTGTGTGCATCGTGATTGAATTCTATAAAC
TCAATTTGATACATGCCAAAACGTTGATGTGAAATATGCAGACGTGTCTTTATTCGGTGGAGCA
TGGAATTCTTCTCATTGTAGATCGCTGCTTGACATTGTTTGACAATCCACTGGTCGACTCTCTT
CACACAACTTACAATGAGCTCAAGGTAGGTTAATGAACTCGAGCTATGATTGTTATCAGCTTCT
TGCATATCCACATATACATCAATAAATTCCTTCATTCGTTGAACATATGTAGTTACAGAAAGAA
TGCAAGAACCAGAGTAAGAAACCGATTTCTGGAAAAGATAATTCAAAGAATCTATACAGGTATC
GTATCTTCGTCTGTAGAGATTTAATATTTTGACTTTTCTCTTATAGCTTAAAAATGGGTGTGTT
CGGCATTCTAAATCAATGTCACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAA
GATGGTCTCCTGGAAGGTAACTGTCCTAAAACAGAGATTAGCATGTTTCAGAAGTTTTTGTGAG
AACCTTACTGTCCTATAACAGACAATTTATTTTGCCACATGTTGTAGATTTGGCACGTAAGAGA
CGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAA
GACTAGTGTCTCGCGGCTGAATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.301847812
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a