Plant Circular RNA Database

Detail information of 5_circ_igg.7

			
						 General Information
					
						CircRNA Name
						5_circ_igg.7
					
						ID in PlantcircBase
						ath_circ_041546
					
						Alias
						5:15517297-15521015
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 15517297-15521015  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_ag.8 AT5G38747_circ_g.1 						
					
						Support reads
						1/2/4/3/2
					
						Tissues
						root;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_igg.7
ID in PlantcircBase	ath_circ_041546
Alias	5:15517297-15521015
Organism	Arabidpsis thaliana
Position	chr5: 15517297-15521015 JBrowse»
Reference genome	TAIR10.38
Type	igg-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_ag.8 AT5G38747_circ_g.1
Support reads	1/2/4/3/2
Tissues	root;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA
TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGggtttgactcaaaccgtttgagagcttg
gtgtttacttgcaaccacattcttggattctctaacacaaggttgtaaggctgaatatcgtgtg
aatcagat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACATTCTTGGATTCTCTAAC
ACAAGGTTGTAAGGCTGAATATCGTGTGAATCAGATAAGGAATAACTATTTTAACTTATCTTGA
ATCAATATACAATTATATTAATCGAAATAAGCTAGAGAAAGGTTTATTTGTCTGTGGTATAAGC
AGTGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAGAATATCAACTAGCCACGA
ACTCCTACTTGTAAGTTGCCATTTCCAAATCTCAAGATAATTCTATTGGATCGGACAATTTGCC
TTTGGTTATGTATGTATTGCTGGTCTTGTATACATTTGCACTGATGGAACACTGTTATTTGTAA
ACCGTTTTGGATTTTGTTAGCTTAAAGCACCGCAATCCGTAGCTGTGAAAAAATGTGAGAGATC
AAGTTCTAGAGAAAAACCAAAAGCTAAGCAAGATTCAGATTTGTGGAAGTAAAGCTTTTGCATG
ATAATTCAATAAAATCATATTCAGGTCTTGGTTTCTTTCTATGGTTTGGAACTTATATAGTATG
TTCTACTAGTTTTTGTTGTCTTCTCAAATCGGACGCAAATAATGTCTCGGCGTGCCTCTCTTAT
ATGGATACACCATTCTGCTTATTTCAGATCTATCGCAATGGAGCATTAAAATGGTCGTGCGTCA
TATTTGCGTATGTTTCTTCAATCTTTCTTATTTCTTTTATGCTTAGTCTTTCGACTTACTTTCT
CTTCTCTTCTTCAGACGTAGAAGATTATATTAGTCTCTCAAAAACAAATATTTTGTTTGAGTAC
TGTACTGATCAAACACCCATTGGTTTGCTTCACTTTTCACATTTCATTTTACTTTGATGCAGCC
ATTCGAGTCCAAAGTCAAGATCTATTTAGAGCAATCAAAATACACATTTTGAAAAGAAGTAATT
GTTTAATTTTGTTATTGAGAATTTACTTGAAGTTTTGTGTTTTCTTGAATTGGGAATTTTTTTT
TTGCAGGTCTTCTTTCATCCTTGCACGGTGAAGAACAAAGACTCTGCTTCCCTTTCCAGGTTTC
ACTTTGATTTTTATCAGATATTTGTCTTTGTGCTAATATATGGTTATGAAGTTCTACTGTTTCA
GATGGATTTCGTTAATAAGTGTTCATGGGATTAATACAACAATCTTCAGCATTAATACAATTTT
TCTTTTCTTTCACTATAAAGGATTCTTATTCGTTTGGTTGTTGAAAGATACCAAGAACTCTCAT
CAAAACTAGAGTACAATTTTCCATTGAAGTAGCAAGAGTAGATCTATGGAGGTGCTTTCCAGGC
ATGTTTTTACTATAACTTAATTTCATTTGTTTGATCCAACTTCAAAGCTTCATTGCTATAACTA
ATTTTTTCAAAACATTTCAGGATTTTGAAGTAACGTGAAGCTGAATATTGAAAATATGCAAAGA
CAAAAAGGTAACATATAGTTTTGACATGATATCTCTAACGATTATGCCACTTACATATCCATTA
ATTAGTATTCAATAAGTAACTTTGCATCCGAAACGTATATAACCATCCTAGTACTATGTTACAA
CTTCTTAACTAACAATTGGAGTTCAGGGTGTAAAGAAAGATCAATCCTTTTATTTGGGATGCTT
ACTGTCCCTTTTCGGTTCGAATTACATAGTTTCAATGAGCGTCCAAGAAATTTGATTGGGATTT
TCGCAGGCTCGAGCGGGAATCAGGGAGGTTCACTTCCATTGACTTACATCGACAGCAGAAGGCA
GTAGTCAAGGTGCTCTCCTGATTAGGTGATGAATCTTCAACCTTACCAACAAATGTCTTTTTTA
CCCTTTCTCTTTATACTAATTTTATTTTCCCAACAATGACCTTATCAAAAAGGTGGTGCTCTCG
ATAATTGACAAGTGTGGTCTTAGGTTGTTGGCTGTTGCTCTCGTTTGACATCGATACTCATAGT
TTCAGTCTTCTTTTGTTTTTCTTTACTGCGTGGAAACAAATGTTCATTTGTTAGTGTTTTTATT
TCCCTCCTTAGGTGGTGCTAGAGAAAACGAAGGAAAGCCTAGGTGCATGGTGCAACATATGGTA
ATTTGTTGGATTGTTGCCCCCAAGACATGAAAGTACTGAAACCATTGGAAGGGCTTTGACTCTC
GGTGTTAACATCAAGATGATCACTGGTGAATTTGCTCACCCATTGATCGTGTTGTAATAATAAT
ACACCTTTGCCATTTTCCACTAACATTCTATTGGACGACGTAGGCCAGATAACCAGTTGTAAAC
TTGGAATGGGAATAAACATGTATCCATCTTCGGCTTTTCTTGGTACGCACAAGTGGTAGGAACC
AACAAACCCCATGGATGAATATGTCTCTCAAGTCTCAATGGTACATGTCATGAATATCTTTCAG
TTGTCTTTGCGAGAACCAAATTGTCCTAAAATAGAGTTTCTGACACAGGTTGTAAGTTTTGTCA
CGTAAGAGACATGGAGAACATACCTGGCAGAGAATCAAGTGAATTCCTCCAAAGAACTGATCAG
ATTAGAAAGAGCTAGTGTCTTGCGGCTGAATAGGTAAACATTCTTAGAATAAAACTACTAGCAA
ATTGGAAATATGTTATACCCATCTTTCTCAGATTTTTTCAGAATGGGAGATATGTAAAGGAAGG
AACAAATACTTTTGACAAACTATTTAGGCCATCGTCAAAGATTTTGCAACATACACATCCATTA
ATTAGTATTCAGTAAGTAATCTTGCATCTATATAAATAACCAACCTAATACTTTGTCAGTAACA
ATCTCACTAAATGTTTGTATAATTGTGTATGGTAGGTAGACAGTGGAAAGAAGTGTCTAAAGGA
AACTTGAACCCAGATGTCTGCATAGAGGTAAATCCACATAAGATCTCACACCCTCGGCCAAGTT
CACATCACACATTAGAATTATAGAACCTTGGTAAGTAGAATAAACCTACTTAACTACCTATGAT
AGTTTTCAACTTAAAATCTGTGTGCATCGTGATTGAATTCTATAAACTCAATTTGATACATGCC
AAAACGTTGATGTGAAATATGCAGACGTGTCTTTATTCGGTGGAGCATGGAATTCTTCTCATTG
TAGATCGCTGCTTGACATTGTTTGACAATCCACTGGTCGACTCTCTTCACACAACTTACAATGA
GCTCAAGGTAGGTTAATGAACTCGAGCTATGATTGTTATCAGCTTCTTGCATATCCACATATAC
ATCAATAAATTCCTTCATTCGTTGAACATATGTAGTTACAGAAAGAATGCAAGAACCAGAGTAA
GAAACCGATTTCTGGAAAAGATAATTCAAAGAATCTATACAGGTATCGTATCTTCGTCTGTAGA
GATTTAATATTTTGACTTTTCTCTTATAGCTTAAAAATGGGTGTGTTCGGCATTCTAAATCAAT
GTCACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAAGATGGTCTCCTGGAAGG
TAACTGTCCTAAAACAGAGATTAGCATGTTTCAGAAGTTTTTGTGAGAACCTTACTGTCCTATA
ACAGACAATTTATTTTGCCACATGTTGTAGATTTGGCACGTAAGAGACGTAGAGAACATACTTG
TTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGC
TGAATAG
						
					

			
		

Sequences
Splice junction sequence	GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGggtttgactcaaaccgtttgagagcttg gtgtttacttgcaaccacattcttggattctctaacacaaggttgtaaggctgaatatcgtgtg aatcagat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCACATTCTTGGATTCTCTAAC ACAAGGTTGTAAGGCTGAATATCGTGTGAATCAGATAAGGAATAACTATTTTAACTTATCTTGA ATCAATATACAATTATATTAATCGAAATAAGCTAGAGAAAGGTTTATTTGTCTGTGGTATAAGC AGTGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAGAATATCAACTAGCCACGA ACTCCTACTTGTAAGTTGCCATTTCCAAATCTCAAGATAATTCTATTGGATCGGACAATTTGCC TTTGGTTATGTATGTATTGCTGGTCTTGTATACATTTGCACTGATGGAACACTGTTATTTGTAA ACCGTTTTGGATTTTGTTAGCTTAAAGCACCGCAATCCGTAGCTGTGAAAAAATGTGAGAGATC AAGTTCTAGAGAAAAACCAAAAGCTAAGCAAGATTCAGATTTGTGGAAGTAAAGCTTTTGCATG ATAATTCAATAAAATCATATTCAGGTCTTGGTTTCTTTCTATGGTTTGGAACTTATATAGTATG TTCTACTAGTTTTTGTTGTCTTCTCAAATCGGACGCAAATAATGTCTCGGCGTGCCTCTCTTAT ATGGATACACCATTCTGCTTATTTCAGATCTATCGCAATGGAGCATTAAAATGGTCGTGCGTCA TATTTGCGTATGTTTCTTCAATCTTTCTTATTTCTTTTATGCTTAGTCTTTCGACTTACTTTCT CTTCTCTTCTTCAGACGTAGAAGATTATATTAGTCTCTCAAAAACAAATATTTTGTTTGAGTAC TGTACTGATCAAACACCCATTGGTTTGCTTCACTTTTCACATTTCATTTTACTTTGATGCAGCC ATTCGAGTCCAAAGTCAAGATCTATTTAGAGCAATCAAAATACACATTTTGAAAAGAAGTAATT GTTTAATTTTGTTATTGAGAATTTACTTGAAGTTTTGTGTTTTCTTGAATTGGGAATTTTTTTT TTGCAGGTCTTCTTTCATCCTTGCACGGTGAAGAACAAAGACTCTGCTTCCCTTTCCAGGTTTC ACTTTGATTTTTATCAGATATTTGTCTTTGTGCTAATATATGGTTATGAAGTTCTACTGTTTCA GATGGATTTCGTTAATAAGTGTTCATGGGATTAATACAACAATCTTCAGCATTAATACAATTTT TCTTTTCTTTCACTATAAAGGATTCTTATTCGTTTGGTTGTTGAAAGATACCAAGAACTCTCAT CAAAACTAGAGTACAATTTTCCATTGAAGTAGCAAGAGTAGATCTATGGAGGTGCTTTCCAGGC ATGTTTTTACTATAACTTAATTTCATTTGTTTGATCCAACTTCAAAGCTTCATTGCTATAACTA ATTTTTTCAAAACATTTCAGGATTTTGAAGTAACGTGAAGCTGAATATTGAAAATATGCAAAGA CAAAAAGGTAACATATAGTTTTGACATGATATCTCTAACGATTATGCCACTTACATATCCATTA ATTAGTATTCAATAAGTAACTTTGCATCCGAAACGTATATAACCATCCTAGTACTATGTTACAA CTTCTTAACTAACAATTGGAGTTCAGGGTGTAAAGAAAGATCAATCCTTTTATTTGGGATGCTT ACTGTCCCTTTTCGGTTCGAATTACATAGTTTCAATGAGCGTCCAAGAAATTTGATTGGGATTT TCGCAGGCTCGAGCGGGAATCAGGGAGGTTCACTTCCATTGACTTACATCGACAGCAGAAGGCA GTAGTCAAGGTGCTCTCCTGATTAGGTGATGAATCTTCAACCTTACCAACAAATGTCTTTTTTA CCCTTTCTCTTTATACTAATTTTATTTTCCCAACAATGACCTTATCAAAAAGGTGGTGCTCTCG ATAATTGACAAGTGTGGTCTTAGGTTGTTGGCTGTTGCTCTCGTTTGACATCGATACTCATAGT TTCAGTCTTCTTTTGTTTTTCTTTACTGCGTGGAAACAAATGTTCATTTGTTAGTGTTTTTATT TCCCTCCTTAGGTGGTGCTAGAGAAAACGAAGGAAAGCCTAGGTGCATGGTGCAACATATGGTA ATTTGTTGGATTGTTGCCCCCAAGACATGAAAGTACTGAAACCATTGGAAGGGCTTTGACTCTC GGTGTTAACATCAAGATGATCACTGGTGAATTTGCTCACCCATTGATCGTGTTGTAATAATAAT ACACCTTTGCCATTTTCCACTAACATTCTATTGGACGACGTAGGCCAGATAACCAGTTGTAAAC TTGGAATGGGAATAAACATGTATCCATCTTCGGCTTTTCTTGGTACGCACAAGTGGTAGGAACC AACAAACCCCATGGATGAATATGTCTCTCAAGTCTCAATGGTACATGTCATGAATATCTTTCAG TTGTCTTTGCGAGAACCAAATTGTCCTAAAATAGAGTTTCTGACACAGGTTGTAAGTTTTGTCA CGTAAGAGACATGGAGAACATACCTGGCAGAGAATCAAGTGAATTCCTCCAAAGAACTGATCAG ATTAGAAAGAGCTAGTGTCTTGCGGCTGAATAGGTAAACATTCTTAGAATAAAACTACTAGCAA ATTGGAAATATGTTATACCCATCTTTCTCAGATTTTTTCAGAATGGGAGATATGTAAAGGAAGG AACAAATACTTTTGACAAACTATTTAGGCCATCGTCAAAGATTTTGCAACATACACATCCATTA ATTAGTATTCAGTAAGTAATCTTGCATCTATATAAATAACCAACCTAATACTTTGTCAGTAACA ATCTCACTAAATGTTTGTATAATTGTGTATGGTAGGTAGACAGTGGAAAGAAGTGTCTAAAGGA AACTTGAACCCAGATGTCTGCATAGAGGTAAATCCACATAAGATCTCACACCCTCGGCCAAGTT CACATCACACATTAGAATTATAGAACCTTGGTAAGTAGAATAAACCTACTTAACTACCTATGAT AGTTTTCAACTTAAAATCTGTGTGCATCGTGATTGAATTCTATAAACTCAATTTGATACATGCC AAAACGTTGATGTGAAATATGCAGACGTGTCTTTATTCGGTGGAGCATGGAATTCTTCTCATTG TAGATCGCTGCTTGACATTGTTTGACAATCCACTGGTCGACTCTCTTCACACAACTTACAATGA GCTCAAGGTAGGTTAATGAACTCGAGCTATGATTGTTATCAGCTTCTTGCATATCCACATATAC ATCAATAAATTCCTTCATTCGTTGAACATATGTAGTTACAGAAAGAATGCAAGAACCAGAGTAA GAAACCGATTTCTGGAAAAGATAATTCAAAGAATCTATACAGGTATCGTATCTTCGTCTGTAGA GATTTAATATTTTGACTTTTCTCTTATAGCTTAAAAATGGGTGTGTTCGGCATTCTAAATCAAT GTCACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAAGATGGTCTCCTGGAAGG TAACTGTCCTAAAACAGAGATTAGCATGTTTCAGAAGTTTTTGTGAGAACCTTACTGTCCTATA ACAGACAATTTATTTTGCCACATGTTGTAGATTTGGCACGTAAGAGACGTAGAGAACATACTTG TTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGC TGAATAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.211861262

Conservation Information
Conserved circRNAs	NA
PMCS	0.211861262

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_igg.7

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