Plant Circular RNA Database

Detail information of 5_circ_igg.4

			
						 General Information
					
						CircRNA Name
						5_circ_igg.4
					
						ID in PlantcircBase
						ath_circ_041543
					
						Alias
						Chr5:15517279|15521015
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 15517279-15521015  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						CIRCexplorer; CIRI
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							5_circ_igg.3 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 5_circ_ag.8 AT5G38747_circ_g.1 						
					
						Support reads
						2
					
						Tissues
						seedling
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_igg.4
ID in PlantcircBase	ath_circ_041543
Alias	Chr5:15517279\|15521015
Organism	Arabidpsis thaliana
Position	chr5: 15517279-15521015 JBrowse»
Reference genome	TAIR10.38
Type	igg-circRNA
Identification method	CIRCexplorer; CIRI
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	5_circ_igg.3 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 5_circ_ag.8 AT5G38747_circ_g.1
Support reads	2
Tissues	seedling
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA
TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGgtagttttaattgttcagggtttgactc
aaaccgtttgagagcttggtgtttacttgcaaccacattcttggattctctaacacaaggttgt
aaggctga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCAC
ATTCTTGGATTCTCTAACACAAGGTTGTAAGGCTGAATATCGTGTGAATCAGATAAGGAATAAC
TATTTTAACTTATCTTGAATCAATATACAATTATATTAATCGAAATAAGCTAGAGAAAGGTTTA
TTTGTCTGTGGTATAAGCAGTGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAG
AATATCAACTAGCCACGAACTCCTACTTGTAAGTTGCCATTTCCAAATCTCAAGATAATTCTAT
TGGATCGGACAATTTGCCTTTGGTTATGTATGTATTGCTGGTCTTGTATACATTTGCACTGATG
GAACACTGTTATTTGTAAACCGTTTTGGATTTTGTTAGCTTAAAGCACCGCAATCCGTAGCTGT
GAAAAAATGTGAGAGATCAAGTTCTAGAGAAAAACCAAAAGCTAAGCAAGATTCAGATTTGTGG
AAGTAAAGCTTTTGCATGATAATTCAATAAAATCATATTCAGGTCTTGGTTTCTTTCTATGGTT
TGGAACTTATATAGTATGTTCTACTAGTTTTTGTTGTCTTCTCAAATCGGACGCAAATAATGTC
TCGGCGTGCCTCTCTTATATGGATACACCATTCTGCTTATTTCAGATCTATCGCAATGGAGCAT
TAAAATGGTCGTGCGTCATATTTGCGTATGTTTCTTCAATCTTTCTTATTTCTTTTATGCTTAG
TCTTTCGACTTACTTTCTCTTCTCTTCTTCAGACGTAGAAGATTATATTAGTCTCTCAAAAACA
AATATTTTGTTTGAGTACTGTACTGATCAAACACCCATTGGTTTGCTTCACTTTTCACATTTCA
TTTTACTTTGATGCAGCCATTCGAGTCCAAAGTCAAGATCTATTTAGAGCAATCAAAATACACA
TTTTGAAAAGAAGTAATTGTTTAATTTTGTTATTGAGAATTTACTTGAAGTTTTGTGTTTTCTT
GAATTGGGAATTTTTTTTTTGCAGGTCTTCTTTCATCCTTGCACGGTGAAGAACAAAGACTCTG
CTTCCCTTTCCAGGTTTCACTTTGATTTTTATCAGATATTTGTCTTTGTGCTAATATATGGTTA
TGAAGTTCTACTGTTTCAGATGGATTTCGTTAATAAGTGTTCATGGGATTAATACAACAATCTT
CAGCATTAATACAATTTTTCTTTTCTTTCACTATAAAGGATTCTTATTCGTTTGGTTGTTGAAA
GATACCAAGAACTCTCATCAAAACTAGAGTACAATTTTCCATTGAAGTAGCAAGAGTAGATCTA
TGGAGGTGCTTTCCAGGCATGTTTTTACTATAACTTAATTTCATTTGTTTGATCCAACTTCAAA
GCTTCATTGCTATAACTAATTTTTTCAAAACATTTCAGGATTTTGAAGTAACGTGAAGCTGAAT
ATTGAAAATATGCAAAGACAAAAAGGTAACATATAGTTTTGACATGATATCTCTAACGATTATG
CCACTTACATATCCATTAATTAGTATTCAATAAGTAACTTTGCATCCGAAACGTATATAACCAT
CCTAGTACTATGTTACAACTTCTTAACTAACAATTGGAGTTCAGGGTGTAAAGAAAGATCAATC
CTTTTATTTGGGATGCTTACTGTCCCTTTTCGGTTCGAATTACATAGTTTCAATGAGCGTCCAA
GAAATTTGATTGGGATTTTCGCAGGCTCGAGCGGGAATCAGGGAGGTTCACTTCCATTGACTTA
CATCGACAGCAGAAGGCAGTAGTCAAGGTGCTCTCCTGATTAGGTGATGAATCTTCAACCTTAC
CAACAAATGTCTTTTTTACCCTTTCTCTTTATACTAATTTTATTTTCCCAACAATGACCTTATC
AAAAAGGTGGTGCTCTCGATAATTGACAAGTGTGGTCTTAGGTTGTTGGCTGTTGCTCTCGTTT
GACATCGATACTCATAGTTTCAGTCTTCTTTTGTTTTTCTTTACTGCGTGGAAACAAATGTTCA
TTTGTTAGTGTTTTTATTTCCCTCCTTAGGTGGTGCTAGAGAAAACGAAGGAAAGCCTAGGTGC
ATGGTGCAACATATGGTAATTTGTTGGATTGTTGCCCCCAAGACATGAAAGTACTGAAACCATT
GGAAGGGCTTTGACTCTCGGTGTTAACATCAAGATGATCACTGGTGAATTTGCTCACCCATTGA
TCGTGTTGTAATAATAATACACCTTTGCCATTTTCCACTAACATTCTATTGGACGACGTAGGCC
AGATAACCAGTTGTAAACTTGGAATGGGAATAAACATGTATCCATCTTCGGCTTTTCTTGGTAC
GCACAAGTGGTAGGAACCAACAAACCCCATGGATGAATATGTCTCTCAAGTCTCAATGGTACAT
GTCATGAATATCTTTCAGTTGTCTTTGCGAGAACCAAATTGTCCTAAAATAGAGTTTCTGACAC
AGGTTGTAAGTTTTGTCACGTAAGAGACATGGAGAACATACCTGGCAGAGAATCAAGTGAATTC
CTCCAAAGAACTGATCAGATTAGAAAGAGCTAGTGTCTTGCGGCTGAATAGGTAAACATTCTTA
GAATAAAACTACTAGCAAATTGGAAATATGTTATACCCATCTTTCTCAGATTTTTTCAGAATGG
GAGATATGTAAAGGAAGGAACAAATACTTTTGACAAACTATTTAGGCCATCGTCAAAGATTTTG
CAACATACACATCCATTAATTAGTATTCAGTAAGTAATCTTGCATCTATATAAATAACCAACCT
AATACTTTGTCAGTAACAATCTCACTAAATGTTTGTATAATTGTGTATGGTAGGTAGACAGTGG
AAAGAAGTGTCTAAAGGAAACTTGAACCCAGATGTCTGCATAGAGGTAAATCCACATAAGATCT
CACACCCTCGGCCAAGTTCACATCACACATTAGAATTATAGAACCTTGGTAAGTAGAATAAACC
TACTTAACTACCTATGATAGTTTTCAACTTAAAATCTGTGTGCATCGTGATTGAATTCTATAAA
CTCAATTTGATACATGCCAAAACGTTGATGTGAAATATGCAGACGTGTCTTTATTCGGTGGAGC
ATGGAATTCTTCTCATTGTAGATCGCTGCTTGACATTGTTTGACAATCCACTGGTCGACTCTCT
TCACACAACTTACAATGAGCTCAAGGTAGGTTAATGAACTCGAGCTATGATTGTTATCAGCTTC
TTGCATATCCACATATACATCAATAAATTCCTTCATTCGTTGAACATATGTAGTTACAGAAAGA
ATGCAAGAACCAGAGTAAGAAACCGATTTCTGGAAAAGATAATTCAAAGAATCTATACAGGTAT
CGTATCTTCGTCTGTAGAGATTTAATATTTTGACTTTTCTCTTATAGCTTAAAAATGGGTGTGT
TCGGCATTCTAAATCAATGTCACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGA
AGATGGTCTCCTGGAAGGTAACTGTCCTAAAACAGAGATTAGCATGTTTCAGAAGTTTTTGTGA
GAACCTTACTGTCCTATAACAGACAATTTATTTTGCCACATGTTGTAGATTTGGCACGTAAGAG
ACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGA
AGACTAGTGTCTCGCGGCTGAATAG
						
					

			
		

Sequences
Splice junction sequence	GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGgtagttttaattgttcagggtttgactc aaaccgtttgagagcttggtgtttacttgcaaccacattcttggattctctaacacaaggttgt aaggctga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTTGGTGTTTACTTGCAACCAC ATTCTTGGATTCTCTAACACAAGGTTGTAAGGCTGAATATCGTGTGAATCAGATAAGGAATAAC TATTTTAACTTATCTTGAATCAATATACAATTATATTAATCGAAATAAGCTAGAGAAAGGTTTA TTTGTCTGTGGTATAAGCAGTGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAG AATATCAACTAGCCACGAACTCCTACTTGTAAGTTGCCATTTCCAAATCTCAAGATAATTCTAT TGGATCGGACAATTTGCCTTTGGTTATGTATGTATTGCTGGTCTTGTATACATTTGCACTGATG GAACACTGTTATTTGTAAACCGTTTTGGATTTTGTTAGCTTAAAGCACCGCAATCCGTAGCTGT GAAAAAATGTGAGAGATCAAGTTCTAGAGAAAAACCAAAAGCTAAGCAAGATTCAGATTTGTGG AAGTAAAGCTTTTGCATGATAATTCAATAAAATCATATTCAGGTCTTGGTTTCTTTCTATGGTT TGGAACTTATATAGTATGTTCTACTAGTTTTTGTTGTCTTCTCAAATCGGACGCAAATAATGTC TCGGCGTGCCTCTCTTATATGGATACACCATTCTGCTTATTTCAGATCTATCGCAATGGAGCAT TAAAATGGTCGTGCGTCATATTTGCGTATGTTTCTTCAATCTTTCTTATTTCTTTTATGCTTAG TCTTTCGACTTACTTTCTCTTCTCTTCTTCAGACGTAGAAGATTATATTAGTCTCTCAAAAACA AATATTTTGTTTGAGTACTGTACTGATCAAACACCCATTGGTTTGCTTCACTTTTCACATTTCA TTTTACTTTGATGCAGCCATTCGAGTCCAAAGTCAAGATCTATTTAGAGCAATCAAAATACACA TTTTGAAAAGAAGTAATTGTTTAATTTTGTTATTGAGAATTTACTTGAAGTTTTGTGTTTTCTT GAATTGGGAATTTTTTTTTTGCAGGTCTTCTTTCATCCTTGCACGGTGAAGAACAAAGACTCTG CTTCCCTTTCCAGGTTTCACTTTGATTTTTATCAGATATTTGTCTTTGTGCTAATATATGGTTA TGAAGTTCTACTGTTTCAGATGGATTTCGTTAATAAGTGTTCATGGGATTAATACAACAATCTT CAGCATTAATACAATTTTTCTTTTCTTTCACTATAAAGGATTCTTATTCGTTTGGTTGTTGAAA GATACCAAGAACTCTCATCAAAACTAGAGTACAATTTTCCATTGAAGTAGCAAGAGTAGATCTA TGGAGGTGCTTTCCAGGCATGTTTTTACTATAACTTAATTTCATTTGTTTGATCCAACTTCAAA GCTTCATTGCTATAACTAATTTTTTCAAAACATTTCAGGATTTTGAAGTAACGTGAAGCTGAAT ATTGAAAATATGCAAAGACAAAAAGGTAACATATAGTTTTGACATGATATCTCTAACGATTATG CCACTTACATATCCATTAATTAGTATTCAATAAGTAACTTTGCATCCGAAACGTATATAACCAT CCTAGTACTATGTTACAACTTCTTAACTAACAATTGGAGTTCAGGGTGTAAAGAAAGATCAATC CTTTTATTTGGGATGCTTACTGTCCCTTTTCGGTTCGAATTACATAGTTTCAATGAGCGTCCAA GAAATTTGATTGGGATTTTCGCAGGCTCGAGCGGGAATCAGGGAGGTTCACTTCCATTGACTTA CATCGACAGCAGAAGGCAGTAGTCAAGGTGCTCTCCTGATTAGGTGATGAATCTTCAACCTTAC CAACAAATGTCTTTTTTACCCTTTCTCTTTATACTAATTTTATTTTCCCAACAATGACCTTATC AAAAAGGTGGTGCTCTCGATAATTGACAAGTGTGGTCTTAGGTTGTTGGCTGTTGCTCTCGTTT GACATCGATACTCATAGTTTCAGTCTTCTTTTGTTTTTCTTTACTGCGTGGAAACAAATGTTCA TTTGTTAGTGTTTTTATTTCCCTCCTTAGGTGGTGCTAGAGAAAACGAAGGAAAGCCTAGGTGC ATGGTGCAACATATGGTAATTTGTTGGATTGTTGCCCCCAAGACATGAAAGTACTGAAACCATT GGAAGGGCTTTGACTCTCGGTGTTAACATCAAGATGATCACTGGTGAATTTGCTCACCCATTGA TCGTGTTGTAATAATAATACACCTTTGCCATTTTCCACTAACATTCTATTGGACGACGTAGGCC AGATAACCAGTTGTAAACTTGGAATGGGAATAAACATGTATCCATCTTCGGCTTTTCTTGGTAC GCACAAGTGGTAGGAACCAACAAACCCCATGGATGAATATGTCTCTCAAGTCTCAATGGTACAT GTCATGAATATCTTTCAGTTGTCTTTGCGAGAACCAAATTGTCCTAAAATAGAGTTTCTGACAC AGGTTGTAAGTTTTGTCACGTAAGAGACATGGAGAACATACCTGGCAGAGAATCAAGTGAATTC CTCCAAAGAACTGATCAGATTAGAAAGAGCTAGTGTCTTGCGGCTGAATAGGTAAACATTCTTA GAATAAAACTACTAGCAAATTGGAAATATGTTATACCCATCTTTCTCAGATTTTTTCAGAATGG GAGATATGTAAAGGAAGGAACAAATACTTTTGACAAACTATTTAGGCCATCGTCAAAGATTTTG CAACATACACATCCATTAATTAGTATTCAGTAAGTAATCTTGCATCTATATAAATAACCAACCT AATACTTTGTCAGTAACAATCTCACTAAATGTTTGTATAATTGTGTATGGTAGGTAGACAGTGG AAAGAAGTGTCTAAAGGAAACTTGAACCCAGATGTCTGCATAGAGGTAAATCCACATAAGATCT CACACCCTCGGCCAAGTTCACATCACACATTAGAATTATAGAACCTTGGTAAGTAGAATAAACC TACTTAACTACCTATGATAGTTTTCAACTTAAAATCTGTGTGCATCGTGATTGAATTCTATAAA CTCAATTTGATACATGCCAAAACGTTGATGTGAAATATGCAGACGTGTCTTTATTCGGTGGAGC ATGGAATTCTTCTCATTGTAGATCGCTGCTTGACATTGTTTGACAATCCACTGGTCGACTCTCT TCACACAACTTACAATGAGCTCAAGGTAGGTTAATGAACTCGAGCTATGATTGTTATCAGCTTC TTGCATATCCACATATACATCAATAAATTCCTTCATTCGTTGAACATATGTAGTTACAGAAAGA ATGCAAGAACCAGAGTAAGAAACCGATTTCTGGAAAAGATAATTCAAAGAATCTATACAGGTAT CGTATCTTCGTCTGTAGAGATTTAATATTTTGACTTTTCTCTTATAGCTTAAAAATGGGTGTGT TCGGCATTCTAAATCAATGTCACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGA AGATGGTCTCCTGGAAGGTAACTGTCCTAAAACAGAGATTAGCATGTTTCAGAAGTTTTTGTGA GAACCTTACTGTCCTATAACAGACAATTTATTTTGCCACATGTTGTAGATTTGGCACGTAAGAG ACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGA AGACTAGTGTCTCGCGGCTGAATAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.091700644

Conservation Information
Conserved circRNAs	NA
PMCS	0.091700644

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							th-miRf10506-akr NA 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to methyl jasmonate

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	th-miRf10506-akr NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to methyl jasmonate

			
						 Other Information
					
						References
						Zhang et al., 2020

circRNA

Detail information of 5_circ_igg.4

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