Plant Circular RNA Database

Detail information of 5_circ_ag.8

			
						 General Information
					
						CircRNA Name
						5_circ_ag.8
					
						ID in PlantcircBase
						ath_circ_041547
					
						Alias
						5:15517491-15521015
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 15517491-15521015  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 AT5G38747_circ_g.1 						
					
						Support reads
						2
					
						Tissues
						leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	5_circ_ag.8
ID in PlantcircBase	ath_circ_041547
Alias	5:15517491-15521015
Organism	Arabidpsis thaliana
Position	chr5: 15517491-15521015 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	5_circ_igg.3 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 AT5G38747_circ_g.1
Support reads	2
Tissues	leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA
TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGtggcataagttgctggaagaacttgcac
gatagagtaaaacaagaatatcaactagccacgaactcctacttgtaagttgccatttccaaat
ctcaagat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAGAATATCAACTAGCCACGAAC
TCCTACTTGTAAGTTGCCATTTCCAAATCTCAAGATAATTCTATTGGATCGGACAATTTGCCTT
TGGTTATGTATGTATTGCTGGTCTTGTATACATTTGCACTGATGGAACACTGTTATTTGTAAAC
CGTTTTGGATTTTGTTAGCTTAAAGCACCGCAATCCGTAGCTGTGAAAAAATGTGAGAGATCAA
GTTCTAGAGAAAAACCAAAAGCTAAGCAAGATTCAGATTTGTGGAAGTAAAGCTTTTGCATGAT
AATTCAATAAAATCATATTCAGGTCTTGGTTTCTTTCTATGGTTTGGAACTTATATAGTATGTT
CTACTAGTTTTTGTTGTCTTCTCAAATCGGACGCAAATAATGTCTCGGCGTGCCTCTCTTATAT
GGATACACCATTCTGCTTATTTCAGATCTATCGCAATGGAGCATTAAAATGGTCGTGCGTCATA
TTTGCGTATGTTTCTTCAATCTTTCTTATTTCTTTTATGCTTAGTCTTTCGACTTACTTTCTCT
TCTCTTCTTCAGACGTAGAAGATTATATTAGTCTCTCAAAAACAAATATTTTGTTTGAGTACTG
TACTGATCAAACACCCATTGGTTTGCTTCACTTTTCACATTTCATTTTACTTTGATGCAGCCAT
TCGAGTCCAAAGTCAAGATCTATTTAGAGCAATCAAAATACACATTTTGAAAAGAAGTAATTGT
TTAATTTTGTTATTGAGAATTTACTTGAAGTTTTGTGTTTTCTTGAATTGGGAATTTTTTTTTT
GCAGGTCTTCTTTCATCCTTGCACGGTGAAGAACAAAGACTCTGCTTCCCTTTCCAGGTTTCAC
TTTGATTTTTATCAGATATTTGTCTTTGTGCTAATATATGGTTATGAAGTTCTACTGTTTCAGA
TGGATTTCGTTAATAAGTGTTCATGGGATTAATACAACAATCTTCAGCATTAATACAATTTTTC
TTTTCTTTCACTATAAAGGATTCTTATTCGTTTGGTTGTTGAAAGATACCAAGAACTCTCATCA
AAACTAGAGTACAATTTTCCATTGAAGTAGCAAGAGTAGATCTATGGAGGTGCTTTCCAGGCAT
GTTTTTACTATAACTTAATTTCATTTGTTTGATCCAACTTCAAAGCTTCATTGCTATAACTAAT
TTTTTCAAAACATTTCAGGATTTTGAAGTAACGTGAAGCTGAATATTGAAAATATGCAAAGACA
AAAAGGTAACATATAGTTTTGACATGATATCTCTAACGATTATGCCACTTACATATCCATTAAT
TAGTATTCAATAAGTAACTTTGCATCCGAAACGTATATAACCATCCTAGTACTATGTTACAACT
TCTTAACTAACAATTGGAGTTCAGGGTGTAAAGAAAGATCAATCCTTTTATTTGGGATGCTTAC
TGTCCCTTTTCGGTTCGAATTACATAGTTTCAATGAGCGTCCAAGAAATTTGATTGGGATTTTC
GCAGGCTCGAGCGGGAATCAGGGAGGTTCACTTCCATTGACTTACATCGACAGCAGAAGGCAGT
AGTCAAGGTGCTCTCCTGATTAGGTGATGAATCTTCAACCTTACCAACAAATGTCTTTTTTACC
CTTTCTCTTTATACTAATTTTATTTTCCCAACAATGACCTTATCAAAAAGGTGGTGCTCTCGAT
AATTGACAAGTGTGGTCTTAGGTTGTTGGCTGTTGCTCTCGTTTGACATCGATACTCATAGTTT
CAGTCTTCTTTTGTTTTTCTTTACTGCGTGGAAACAAATGTTCATTTGTTAGTGTTTTTATTTC
CCTCCTTAGGTGGTGCTAGAGAAAACGAAGGAAAGCCTAGGTGCATGGTGCAACATATGGTAAT
TTGTTGGATTGTTGCCCCCAAGACATGAAAGTACTGAAACCATTGGAAGGGCTTTGACTCTCGG
TGTTAACATCAAGATGATCACTGGTGAATTTGCTCACCCATTGATCGTGTTGTAATAATAATAC
ACCTTTGCCATTTTCCACTAACATTCTATTGGACGACGTAGGCCAGATAACCAGTTGTAAACTT
GGAATGGGAATAAACATGTATCCATCTTCGGCTTTTCTTGGTACGCACAAGTGGTAGGAACCAA
CAAACCCCATGGATGAATATGTCTCTCAAGTCTCAATGGTACATGTCATGAATATCTTTCAGTT
GTCTTTGCGAGAACCAAATTGTCCTAAAATAGAGTTTCTGACACAGGTTGTAAGTTTTGTCACG
TAAGAGACATGGAGAACATACCTGGCAGAGAATCAAGTGAATTCCTCCAAAGAACTGATCAGAT
TAGAAAGAGCTAGTGTCTTGCGGCTGAATAGGTAAACATTCTTAGAATAAAACTACTAGCAAAT
TGGAAATATGTTATACCCATCTTTCTCAGATTTTTTCAGAATGGGAGATATGTAAAGGAAGGAA
CAAATACTTTTGACAAACTATTTAGGCCATCGTCAAAGATTTTGCAACATACACATCCATTAAT
TAGTATTCAGTAAGTAATCTTGCATCTATATAAATAACCAACCTAATACTTTGTCAGTAACAAT
CTCACTAAATGTTTGTATAATTGTGTATGGTAGGTAGACAGTGGAAAGAAGTGTCTAAAGGAAA
CTTGAACCCAGATGTCTGCATAGAGGTAAATCCACATAAGATCTCACACCCTCGGCCAAGTTCA
CATCACACATTAGAATTATAGAACCTTGGTAAGTAGAATAAACCTACTTAACTACCTATGATAG
TTTTCAACTTAAAATCTGTGTGCATCGTGATTGAATTCTATAAACTCAATTTGATACATGCCAA
AACGTTGATGTGAAATATGCAGACGTGTCTTTATTCGGTGGAGCATGGAATTCTTCTCATTGTA
GATCGCTGCTTGACATTGTTTGACAATCCACTGGTCGACTCTCTTCACACAACTTACAATGAGC
TCAAGGTAGGTTAATGAACTCGAGCTATGATTGTTATCAGCTTCTTGCATATCCACATATACAT
CAATAAATTCCTTCATTCGTTGAACATATGTAGTTACAGAAAGAATGCAAGAACCAGAGTAAGA
AACCGATTTCTGGAAAAGATAATTCAAAGAATCTATACAGGTATCGTATCTTCGTCTGTAGAGA
TTTAATATTTTGACTTTTCTCTTATAGCTTAAAAATGGGTGTGTTCGGCATTCTAAATCAATGT
CACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAAGATGGTCTCCTGGAAGGTA
ACTGTCCTAAAACAGAGATTAGCATGTTTCAGAAGTTTTTGTGAGAACCTTACTGTCCTATAAC
AGACAATTTATTTTGCCACATGTTGTAGATTTGGCACGTAAGAGACGTAGAGAACATACTTGTT
GGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGCTG
AATAG
						
					

			
		

Sequences
Splice junction sequence	GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGtggcataagttgctggaagaacttgcac gatagagtaaaacaagaatatcaactagccacgaactcctacttgtaagttgccatttccaaat ctcaagat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TGGCATAAGTTGCTGGAAGAACTTGCACGATAGAGTAAAACAAGAATATCAACTAGCCACGAAC TCCTACTTGTAAGTTGCCATTTCCAAATCTCAAGATAATTCTATTGGATCGGACAATTTGCCTT TGGTTATGTATGTATTGCTGGTCTTGTATACATTTGCACTGATGGAACACTGTTATTTGTAAAC CGTTTTGGATTTTGTTAGCTTAAAGCACCGCAATCCGTAGCTGTGAAAAAATGTGAGAGATCAA GTTCTAGAGAAAAACCAAAAGCTAAGCAAGATTCAGATTTGTGGAAGTAAAGCTTTTGCATGAT AATTCAATAAAATCATATTCAGGTCTTGGTTTCTTTCTATGGTTTGGAACTTATATAGTATGTT CTACTAGTTTTTGTTGTCTTCTCAAATCGGACGCAAATAATGTCTCGGCGTGCCTCTCTTATAT GGATACACCATTCTGCTTATTTCAGATCTATCGCAATGGAGCATTAAAATGGTCGTGCGTCATA TTTGCGTATGTTTCTTCAATCTTTCTTATTTCTTTTATGCTTAGTCTTTCGACTTACTTTCTCT TCTCTTCTTCAGACGTAGAAGATTATATTAGTCTCTCAAAAACAAATATTTTGTTTGAGTACTG TACTGATCAAACACCCATTGGTTTGCTTCACTTTTCACATTTCATTTTACTTTGATGCAGCCAT TCGAGTCCAAAGTCAAGATCTATTTAGAGCAATCAAAATACACATTTTGAAAAGAAGTAATTGT TTAATTTTGTTATTGAGAATTTACTTGAAGTTTTGTGTTTTCTTGAATTGGGAATTTTTTTTTT GCAGGTCTTCTTTCATCCTTGCACGGTGAAGAACAAAGACTCTGCTTCCCTTTCCAGGTTTCAC TTTGATTTTTATCAGATATTTGTCTTTGTGCTAATATATGGTTATGAAGTTCTACTGTTTCAGA TGGATTTCGTTAATAAGTGTTCATGGGATTAATACAACAATCTTCAGCATTAATACAATTTTTC TTTTCTTTCACTATAAAGGATTCTTATTCGTTTGGTTGTTGAAAGATACCAAGAACTCTCATCA AAACTAGAGTACAATTTTCCATTGAAGTAGCAAGAGTAGATCTATGGAGGTGCTTTCCAGGCAT GTTTTTACTATAACTTAATTTCATTTGTTTGATCCAACTTCAAAGCTTCATTGCTATAACTAAT TTTTTCAAAACATTTCAGGATTTTGAAGTAACGTGAAGCTGAATATTGAAAATATGCAAAGACA AAAAGGTAACATATAGTTTTGACATGATATCTCTAACGATTATGCCACTTACATATCCATTAAT TAGTATTCAATAAGTAACTTTGCATCCGAAACGTATATAACCATCCTAGTACTATGTTACAACT TCTTAACTAACAATTGGAGTTCAGGGTGTAAAGAAAGATCAATCCTTTTATTTGGGATGCTTAC TGTCCCTTTTCGGTTCGAATTACATAGTTTCAATGAGCGTCCAAGAAATTTGATTGGGATTTTC GCAGGCTCGAGCGGGAATCAGGGAGGTTCACTTCCATTGACTTACATCGACAGCAGAAGGCAGT AGTCAAGGTGCTCTCCTGATTAGGTGATGAATCTTCAACCTTACCAACAAATGTCTTTTTTACC CTTTCTCTTTATACTAATTTTATTTTCCCAACAATGACCTTATCAAAAAGGTGGTGCTCTCGAT AATTGACAAGTGTGGTCTTAGGTTGTTGGCTGTTGCTCTCGTTTGACATCGATACTCATAGTTT CAGTCTTCTTTTGTTTTTCTTTACTGCGTGGAAACAAATGTTCATTTGTTAGTGTTTTTATTTC CCTCCTTAGGTGGTGCTAGAGAAAACGAAGGAAAGCCTAGGTGCATGGTGCAACATATGGTAAT TTGTTGGATTGTTGCCCCCAAGACATGAAAGTACTGAAACCATTGGAAGGGCTTTGACTCTCGG TGTTAACATCAAGATGATCACTGGTGAATTTGCTCACCCATTGATCGTGTTGTAATAATAATAC ACCTTTGCCATTTTCCACTAACATTCTATTGGACGACGTAGGCCAGATAACCAGTTGTAAACTT GGAATGGGAATAAACATGTATCCATCTTCGGCTTTTCTTGGTACGCACAAGTGGTAGGAACCAA CAAACCCCATGGATGAATATGTCTCTCAAGTCTCAATGGTACATGTCATGAATATCTTTCAGTT GTCTTTGCGAGAACCAAATTGTCCTAAAATAGAGTTTCTGACACAGGTTGTAAGTTTTGTCACG TAAGAGACATGGAGAACATACCTGGCAGAGAATCAAGTGAATTCCTCCAAAGAACTGATCAGAT TAGAAAGAGCTAGTGTCTTGCGGCTGAATAGGTAAACATTCTTAGAATAAAACTACTAGCAAAT TGGAAATATGTTATACCCATCTTTCTCAGATTTTTTCAGAATGGGAGATATGTAAAGGAAGGAA CAAATACTTTTGACAAACTATTTAGGCCATCGTCAAAGATTTTGCAACATACACATCCATTAAT TAGTATTCAGTAAGTAATCTTGCATCTATATAAATAACCAACCTAATACTTTGTCAGTAACAAT CTCACTAAATGTTTGTATAATTGTGTATGGTAGGTAGACAGTGGAAAGAAGTGTCTAAAGGAAA CTTGAACCCAGATGTCTGCATAGAGGTAAATCCACATAAGATCTCACACCCTCGGCCAAGTTCA CATCACACATTAGAATTATAGAACCTTGGTAAGTAGAATAAACCTACTTAACTACCTATGATAG TTTTCAACTTAAAATCTGTGTGCATCGTGATTGAATTCTATAAACTCAATTTGATACATGCCAA AACGTTGATGTGAAATATGCAGACGTGTCTTTATTCGGTGGAGCATGGAATTCTTCTCATTGTA GATCGCTGCTTGACATTGTTTGACAATCCACTGGTCGACTCTCTTCACACAACTTACAATGAGC TCAAGGTAGGTTAATGAACTCGAGCTATGATTGTTATCAGCTTCTTGCATATCCACATATACAT CAATAAATTCCTTCATTCGTTGAACATATGTAGTTACAGAAAGAATGCAAGAACCAGAGTAAGA AACCGATTTCTGGAAAAGATAATTCAAAGAATCTATACAGGTATCGTATCTTCGTCTGTAGAGA TTTAATATTTTGACTTTTCTCTTATAGCTTAAAAATGGGTGTGTTCGGCATTCTAAATCAATGT CACAAAGGAGACAAGCGGTAAGAACCACCAAACCCCATTGACGAAGATGGTCTCCTGGAAGGTA ACTGTCCTAAAACAGAGATTAGCATGTTTCAGAAGTTTTTGTGAGAACCTTACTGTCCTATAAC AGACAATTTATTTTGCCACATGTTGTAGATTTGGCACGTAAGAGACGTAGAGAACATACTTGTT GGAGCATCAAATGATTTCCTCCAAAGAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGCTG AATAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.09220387

Conservation Information
Conserved circRNAs	NA
PMCS	0.09220387

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 5_circ_ag.8

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