Detail information of 5_circ_igg.3


General Information
CircRNA Name 5_circ_igg.3
ID in PlantcircBase ath_circ_041542
Alias Chr5:15516044|15521015
Organism Arabidpsis thaliana
Position chr5: 15516044-15521015  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method CIRCexplorer; CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_igg.4 5_circ_igg.5 5_circ_igg.6 5_circ_igg.7 5_circ_ag.8 AT5G38747_circ_g.1
Support reads 2
Tissues seedling
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAAGAAATTGA
TTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAGgtgcaaagtccagagcctagaatgtggc
gtttcttagaactcagaaaacagagaattctggattcgcaaatcaattgaagaatgtgtatact
tacaggca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCAAAGTCCAGAGCCTAGAATGTGGCGTTTCTTAGAACTCAGAAAACAGAGAATTCTGGATT
CGCAAATCAATTGAAGAATGTGTATACTTACAGGCACTTATTCGTATACACGCCGGCATTCATA
CATTCATACATACATACACGCCATGCATTCATACATTCATATATACATACACGCCATGCATTAA
TACATTCATGCATTCATACATTCATGCATTCATACATGCTTGCATTCATGCATCCATGCATTCA
TGCATCCATGCATTCATACATACACGCCATGCATTCATACATTCATGCATTCATACATACACGC
CATGCATTCATACATGCTTGCATTCATGCATCCATGCATTCATACATACATGCATACATGGATT
AGTTGCGTACTTGCTTCCCTTGCACCCTCATAATTGCTTCTTTGATTCTCTGTCTGATACTCTG
TTTACTTACTTAAATACTTTGCTTGTTTGCTACTTTTTTTTCTTCTTCATTCCTTGCTTACTAA
TCAGCTTCCTTCTTTGGTTACTTGTGTGCTAACTCGATTCCTTATTTTTTTCTTTGATTCTGTC
TTTACGTACTTGTTACACGCATACTTCTATGCATCATATTTGCTTGTGCACATTCATAATTTCT
TCTCTGTTTCTTTGATTATGTCTTTACGTACTTGTTACATGCATACATCTATGCATCATATTTG
CTTGTACACATTTATAATTTCTTCTCACTTGCATCCTTGATTCATTTTCTGATCCTTTCGCTTA
CATATTTTCTGCTTTCATTCCTTACTTGATTGCTTTCTTCTTTTATTTTTTCTTCCTTGCTTAA
TTACCAGCTTCTTGGGTTGTTTGTTTCCTTTCTTGCTTCCTTGACTCTTTTGCTTACTTGCTTG
CCTTTGTATTTTCTTCCTTAATTCCTTGGTTAATTGGCTTCCTTGTTTCATTGCTTACATGCTT
GATTTCTTACATACTGTCTTTTTTTACTTAATTCTTTGGTTAACTTGCTTTTCCTGTTTCTTTA
CTGTATTTCTTCCTTAACTACTGAACTTGTTTTAAAATTCTTACTTTCTATCCTTATCGCTTGG
CATATTCTTATCTCAGTTTATTTTCCACTAAAATGTGTACTTTGCTTTAGATAGTACTAGGTTA
CTATTTGAAATTCTACAGATGGAGACTCTCAAAGGGTACTTTTCCCTTTAACTTTCTCTCTTTG
TTTCTAATTTTGTTTTTTAGTAGTTTTAATTGTTCAGGGTTTGACTCAAACCGTTTGAGAGCTT
GGTGTTTACTTGCAACCACATTCTTGGATTCTCTAACACAAGGTTGTAAGGCTGAATATCGTGT
GAATCAGATAAGGAATAACTATTTTAACTTATCTTGAATCAATATACAATTATATTAATCGAAA
TAAGCTAGAGAAAGGTTTATTTGTCTGTGGTATAAGCAGTGGCATAAGTTGCTGGAAGAACTTG
CACGATAGAGTAAAACAAGAATATCAACTAGCCACGAACTCCTACTTGTAAGTTGCCATTTCCA
AATCTCAAGATAATTCTATTGGATCGGACAATTTGCCTTTGGTTATGTATGTATTGCTGGTCTT
GTATACATTTGCACTGATGGAACACTGTTATTTGTAAACCGTTTTGGATTTTGTTAGCTTAAAG
CACCGCAATCCGTAGCTGTGAAAAAATGTGAGAGATCAAGTTCTAGAGAAAAACCAAAAGCTAA
GCAAGATTCAGATTTGTGGAAGTAAAGCTTTTGCATGATAATTCAATAAAATCATATTCAGGTC
TTGGTTTCTTTCTATGGTTTGGAACTTATATAGTATGTTCTACTAGTTTTTGTTGTCTTCTCAA
ATCGGACGCAAATAATGTCTCGGCGTGCCTCTCTTATATGGATACACCATTCTGCTTATTTCAG
ATCTATCGCAATGGAGCATTAAAATGGTCGTGCGTCATATTTGCGTATGTTTCTTCAATCTTTC
TTATTTCTTTTATGCTTAGTCTTTCGACTTACTTTCTCTTCTCTTCTTCAGACGTAGAAGATTA
TATTAGTCTCTCAAAAACAAATATTTTGTTTGAGTACTGTACTGATCAAACACCCATTGGTTTG
CTTCACTTTTCACATTTCATTTTACTTTGATGCAGCCATTCGAGTCCAAAGTCAAGATCTATTT
AGAGCAATCAAAATACACATTTTGAAAAGAAGTAATTGTTTAATTTTGTTATTGAGAATTTACT
TGAAGTTTTGTGTTTTCTTGAATTGGGAATTTTTTTTTTGCAGGTCTTCTTTCATCCTTGCACG
GTGAAGAACAAAGACTCTGCTTCCCTTTCCAGGTTTCACTTTGATTTTTATCAGATATTTGTCT
TTGTGCTAATATATGGTTATGAAGTTCTACTGTTTCAGATGGATTTCGTTAATAAGTGTTCATG
GGATTAATACAACAATCTTCAGCATTAATACAATTTTTCTTTTCTTTCACTATAAAGGATTCTT
ATTCGTTTGGTTGTTGAAAGATACCAAGAACTCTCATCAAAACTAGAGTACAATTTTCCATTGA
AGTAGCAAGAGTAGATCTATGGAGGTGCTTTCCAGGCATGTTTTTACTATAACTTAATTTCATT
TGTTTGATCCAACTTCAAAGCTTCATTGCTATAACTAATTTTTTCAAAACATTTCAGGATTTTG
AAGTAACGTGAAGCTGAATATTGAAAATATGCAAAGACAAAAAGGTAACATATAGTTTTGACAT
GATATCTCTAACGATTATGCCACTTACATATCCATTAATTAGTATTCAATAAGTAACTTTGCAT
CCGAAACGTATATAACCATCCTAGTACTATGTTACAACTTCTTAACTAACAATTGGAGTTCAGG
GTGTAAAGAAAGATCAATCCTTTTATTTGGGATGCTTACTGTCCCTTTTCGGTTCGAATTACAT
AGTTTCAATGAGCGTCCAAGAAATTTGATTGGGATTTTCGCAGGCTCGAGCGGGAATCAGGGAG
GTTCACTTCCATTGACTTACATCGACAGCAGAAGGCAGTAGTCAAGGTGCTCTCCTGATTAGGT
GATGAATCTTCAACCTTACCAACAAATGTCTTTTTTACCCTTTCTCTTTATACTAATTTTATTT
TCCCAACAATGACCTTATCAAAAAGGTGGTGCTCTCGATAATTGACAAGTGTGGTCTTAGGTTG
TTGGCTGTTGCTCTCGTTTGACATCGATACTCATAGTTTCAGTCTTCTTTTGTTTTTCTTTACT
GCGTGGAAACAAATGTTCATTTGTTAGTGTTTTTATTTCCCTCCTTAGGTGGTGCTAGAGAAAA
CGAAGGAAAGCCTAGGTGCATGGTGCAACATATGGTAATTTGTTGGATTGTTGCCCCCAAGACA
TGAAAGTACTGAAACCATTGGAAGGGCTTTGACTCTCGGTGTTAACATCAAGATGATCACTGGT
GAATTTGCTCACCCATTGATCGTGTTGTAATAATAATACACCTTTGCCATTTTCCACTAACATT
CTATTGGACGACGTAGGCCAGATAACCAGTTGTAAACTTGGAATGGGAATAAACATGTATCCAT
CTTCGGCTTTTCTTGGTACGCACAAGTGGTAGGAACCAACAAACCCCATGGATGAATATGTCTC
TCAAGTCTCAATGGTACATGTCATGAATATCTTTCAGTTGTCTTTGCGAGAACCAAATTGTCCT
AAAATAGAGTTTCTGACACAGGTTGTAAGTTTTGTCACGTAAGAGACATGGAGAACATACCTGG
CAGAGAATCAAGTGAATTCCTCCAAAGAACTGATCAGATTAGAAAGAGCTAGTGTCTTGCGGCT
GAATAGGTAAACATTCTTAGAATAAAACTACTAGCAAATTGGAAATATGTTATACCCATCTTTC
TCAGATTTTTTCAGAATGGGAGATATGTAAAGGAAGGAACAAATACTTTTGACAAACTATTTAG
GCCATCGTCAAAGATTTTGCAACATACACATCCATTAATTAGTATTCAGTAAGTAATCTTGCAT
CTATATAAATAACCAACCTAATACTTTGTCAGTAACAATCTCACTAAATGTTTGTATAATTGTG
TATGGTAGGTAGACAGTGGAAAGAAGTGTCTAAAGGAAACTTGAACCCAGATGTCTGCATAGAG
GTAAATCCACATAAGATCTCACACCCTCGGCCAAGTTCACATCACACATTAGAATTATAGAACC
TTGGTAAGTAGAATAAACCTACTTAACTACCTATGATAGTTTTCAACTTAAAATCTGTGTGCAT
CGTGATTGAATTCTATAAACTCAATTTGATACATGCCAAAACGTTGATGTGAAATATGCAGACG
TGTCTTTATTCGGTGGAGCATGGAATTCTTCTCATTGTAGATCGCTGCTTGACATTGTTTGACA
ATCCACTGGTCGACTCTCTTCACACAACTTACAATGAGCTCAAGGTAGGTTAATGAACTCGAGC
TATGATTGTTATCAGCTTCTTGCATATCCACATATACATCAATAAATTCCTTCATTCGTTGAAC
ATATGTAGTTACAGAAAGAATGCAAGAACCAGAGTAAGAAACCGATTTCTGGAAAAGATAATTC
AAAGAATCTATACAGGTATCGTATCTTCGTCTGTAGAGATTTAATATTTTGACTTTTCTCTTAT
AGCTTAAAAATGGGTGTGTTCGGCATTCTAAATCAATGTCACAAAGGAGACAAGCGGTAAGAAC
CACCAAACCCCATTGACGAAGATGGTCTCCTGGAAGGTAACTGTCCTAAAACAGAGATTAGCAT
GTTTCAGAAGTTTTTGTGAGAACCTTACTGTCCTATAACAGACAATTTATTTTGCCACATGTTG
TAGATTTGGCACGTAAGAGACGTAGAGAACATACTTGTTGGAGCATCAAATGATTTCCTCCAAA
GAAATTGATTAGATTGGGAAGACTAGTGTCTCGCGGCTGAATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.095594306
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs th-miRf10506-akr NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to methyl jasmonate
Other Information
References Zhang et al., 2020