Detail information of 5_circ_ag.7


General Information
CircRNA Name 5_circ_ag.7
ID in PlantcircBase ath_circ_045896
Alias At_ciR2722
Organism Arabidpsis thaliana
Position chr5: 25984941-25989728  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G65050_circ_g.1 AT5G65050_circ_g.2 5_circ_ag.3 AT5G65050_circ_g.4 AT5G65050_circ_g.5 AT5G65050_circ_g.6 AT5G65050_circ_g.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 AT5G65060_circ_g.1 AT5G65060_circ_g.2 AT5G65060_circ_g.3
Support reads 3/36
Tissues leaf/leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTTCTAATGAAATTTTTGTTTTGTTCATGATATCTCCAGCATGTCAAAGATCATTGATCGT
TATGAAATACATCATGCTGATGAACTTAAAGCCTTAgatcttgcagaaaaaactcggaattatc
tgccactcaaagagttactagaaatagtccaaaggttagcacaaagacacttttatctccctct
tcttctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTTGCAGAAAAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGGT
TAGCACAAAGACACTTTTATCTCCCTCTTCTTCTGATGAAAAATACTTTTTTTTTTCTTTTCTT
TTGGCGAATTATGAATACAGCAAGCTTGAAGAATCAAATGTCGATAATGCAAGTGTGGATACTT
TAATTTCTCTGGAGGAACAGCTCGAGACTGCTCTGTCCGTAACTAGAGCTAGGAAGGTATTTTG
TACTGCTACTAAGTGATCAAACCAATTATCCCAAATTTGTTTTGTTAATTAGTTAGATCTGACT
ACAAGTATAGTCTTTTGATATTTTCGTAATGTCTTGTTGTAGACAGAACTAATGATGGGGGAAG
TGAAGTCCCTTCAAAAAACGGTTAGTACTTTTGTTTTTTATTTGCTATCAAAGCTATATTGTAG
GGTAATGCTGATTTTTTAATACTATTAACCTCGGATTCTGCAGATCCTGTAACCAAGTTTAACT
CTAGATATATCTCTAGGTCCTGATTTATTCTTGGCTTTATTTAGATGAAACCCTAATTAGAACC
CAAAAAAAAAGCACTTATAAACTTGTGATCAAATTCGACTTTTCTCCCTCGATGAATCACCGAA
TTGGATGAGGATCATGCTCAGATAGCTTTAGAACTTGTTAGAAATTAATGACCTTATGATCTTG
TCCAAACAGGAGAACTTGCTGAGAGAAGAGAACCAGACTTTGGCTAGCCAGGTGACAAAAACAT
CTCTTGAAGCTAATTCATCAGTTGATACACAATAAAAATAGAAATTACACTTGCGTTAAACATA
TATATATAAAAGTTGAAGGACTTTGATTGATGTTAGGCATTTTTTTTGTGAAACCCCCATATAT
CTTAAAATCTATGATAAAAGTCCTTTCAAAATTCAAATTTCTTGTTACTATTTAGTTGAATGAT
CAGTTTTAATTAATGAAATTTTCCAAAAAAAAACAGCCTTTTTACAATATAGATTGATTTCTTG
TTAATGTTTGTTAGCTGTAGGAAAATAATATAAGAAAGTTTCTTACAGGTGGGGAAGAAGACGT
TTCTGGTTATAGAAGGTGACAGAGGAATGTCATGGGAAAATGGCTCCGGCAACAAAGTACGGGA
GACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCTGAGCTTTCACCTTAAACTTACAGC
CTGATTCAGAAGTTTTTACAAATTTGTAAATTATAAAAAGCTTCATAATAATCTCAACCTTTTT
ATCTTCCTCGCGCCAATGTGGAAATTAAGGTTAAAAATAAAATAAAACAGAAGCTCATGCGAAA
GAATTGTAAAACTAAGATAAAGCTATAGTAGATCTTTATTGTACCTTCGTAGACGATATAAGAT
TTATTCGTGTGTTTGTCTTTTTGTCTGCAAGTACGGATTGGATTTAAAGTTTTACTTTCTTCAG
CGTGAAGAACCCTAGACATAGAGCTTCTTAATTCTTTTGGTTTTACTTATTTAGTTGTTAGTTA
TTTGATTACTTGCACGTGACGTGGCATAGTGATTTTTTCCTTTTCCAAGTTTATCAGTTCTACT
TTTGAGGAACTCAAAAGACTATTCTTCCAGAAAGAAAGAATATGGCAGAAAAATACTTGTCTTG
GCTGTGCTTCCAGCTTCGGCCCATTGAGGCCCATCAGAAGTTGTTTTCATTTTTTGTTTCATTT
GCAGCTGTTACTGTCTTACTGATAAGTAAATTAGTAATATAATATATTTCTGTTTAACTTGGTT
CGAATTTTTGGGTTTTGGAAAACATATTAATATCGGATTGGTTTGGCTTTGGATTCATCTTCGA
GTTTTGAATGTTTGAATTTTAATTTTGCGGGTTATTTGTTTCCAATCAAAACAAGTTTATCGGT
CAGTTTTAGGGTCAGAACCAAAATTAAAATAAGCCTAGGATCCTGAGAATGACAAGTCACGAGC
GGAATATCGTCATATGATATAAGACTAACAAAAACATATTGAAGCTCTCTGATCTTTCCTCTAG
ATTCGTAAGAGATAGACAGATTGAAAGTTTGAAACATACAAACACAGAACGATTGACGACAGCC
AAGAACAAGTATTAGACTTACCAGTGATACTAATTGTATCCAAAATGGATAACCTTAACTTATT
AGTTCTTAATACATCAAAACATGTGAAACAAACAATATAAAACTGCCGGGAAGAAGGAGTAAAA
CTCGCTTAAAACCAATTTCTGTTCGGTAGGGATGATCATCGGACCGGTCTAAACCGACTGGATT
AAAAGTTTCATTTTAACAACACTCCCCCTAAGGAATTTCAACAAGCGTAAAACTAAAATAAATA
ACTATTACATGCCTCTTCCTCGCTTCAAAACGGCACCGTTTCCACTTGTTATTATTTTTCTCTC
TATCGTCTAACAAAAAAAAAAACTGACTTGGGATTTTTTTTCATTTGTCTAGCCCAAAAGAAGA
AGATAGAAACGAAGAAAAAAAGCAAACACATTTTGGGTCCCCGGTGGTTAGGATCAAATTAGGG
CACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAGTCGAGATCAAGCGAATCGAGAA
CAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAAGGTCTCATCGAAAAAGCTCGACAA
CTTTCAATTCTCTGTGAATCTTCCATCGCTGTTGTCGCCGTCTCCGGTTCCGGAAAACTCTACG
ACTCTGCCTCCGGTGACAAGTAAGCTTCTTTCCTCTTCTGGGTCTCACTCGAGTTTTGTGCTTC
TTCTTTTTTTAATCTTATATAATAACTTCAAATCTAGGGCTTTTTGCTTCCTTCAAATCAACTG
AGATCTCCTCCTTTTTTTTCTGTGTGAATAGAGCCTATGCGTTACCACAAACCTAATTTGAGAA
TTGAGATTAAACTTTGAGGTGGCCAAGATATGTTCTTGGTGTTCGTTTCGTGCTTTTTTTTTTC
GAAAATAAGGATTTTTATTTTATATCTTACCTTTAATTCTTACAAAATTTAATATTGCATGCGA
TTCAAGAATTTTTTCTACACGTGTTGATACATTCTCAATGCTGTTCAAGTACTTTTTCTGTCGC
TAATTCATCTGTTGTTCACTTTCAAGATTCTTTTTTTTTTTTTTTTTTTTTTTAAGAAACAGTG
TGTCTATTTGTTAAATTTTGAGATTTGGTTTGTATCCAATGTTGCAATGCACCTCCCGTGGATT
TGTTGATAGAGTAATTGGGGTTAATGGTAACATTTACCAAGAGTCTTTCGTTTAAATTACATTG
TGGAATTACTGATCCCGAATGTATTGTAGTCTAGACTACACTGATTGTTTTTAATTTCTCTCCA
ATGGATTTGCCGATTAAGTACATTAAAGGTCTATAGATGATTTTGAAGGTTGATTGTAACGCTT
GGATAATTTTCCACATTGATGCATCCCCACATGCTACATTACTTATCTAATCGGACATAGATTT
TTACCCTTTTCGGTGTGTACCATACACAGTATAACTAGATTAATGAGCTCAAGATGTTGTGCCC
CTTTTTCTGTTCTTGCAATGAATTCAGTATGGGATTCTTTGGTAAAGAAACTCAAAATTTTAAC
TAAGTCTACGGCCACCTTATATATGTAACAGTAGCGTAGTTGATTTTTTAAGTAGATATCTATC
GTCGATTTCGACCGATAGGGTGAAACTAGTAGACTGTTATCATTTCTTCAACTTTGGTTGTGGA
TATTCCTAACCACATGACCTTTTGCCATTCGTCTATCTAGAAGAAAGCTTAACTACTTCTACTT
CTCTTTTAGAACATTTCTAAAGTGAGTACACTGAACCAAACGAAATTAACCTACATTGACAAAT
TAATATTGACAGTGTTTTTTATATAATACTTACAAAACATCGTCAACTGGATAAGAAAAATATG
TCATCTCGAAAATGGAAATGTAATATATAGCTTCTTCTCATTGCCTTTTGATGTTAACACCAAA
AAAGCTTGATCATGAAAGTGTTAAACTTATAACAAAGTACTTTGACTTGAGTCACTGTTTAGGT
TTTCTTCTTCTGGTGATTAATGTTAAACTTAATATGTCACTATATTAACGTATAAAGTGAAGTC
TAAGGCAGCTTATATTCATATTATTGCATCAACATATCAGTGGACAACACCAATTAGGATAAGA
GTTGTGACCTTCCCAGAAACCATACCCATTTTCTTGGCTTGTCCTCTAAGGATAATCCTGATAT
CATATAGTTTTCAATCCGCTGCTGATTCGGTCGACTCTATGTGTGAATGCTTTGATACTAGGTT
GAACTTGGATTGGATAGTCATAATCATAATTACATATTTATATGCCTTAATTGATATGAAATTG
AAAGAGAATACGAAATTGAATGGAAAAGTAAAACAAAAGTTGTCTTTGCAAAAAATAGAGTGAC
AAAAAAGGAAAATAACTGTAAACACATCTACAGTGGTTTTATTTTAAGCTACACACTCTTAACA
TTTTCTAATATGTAGGCGCATGCTTCAGTAAAGTTGATTAACAAAAAAGTATTAATTGATGCAA
TATGTTATAAGCATTCTTTCACTCTATAAATTCCTCCAACCGATATATACTGTATCCAATTCAT
AGTTTTGTGTATATTATTGTTTCTAATGAAATTTTTGTTTTGTTCATGATATCTCCAGCATGTC
AAAGATCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.592364759
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR837-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017