Detail information of 5_circ_ag.9


General Information
CircRNA Name 5_circ_ag.9
ID in PlantcircBase ath_circ_045898
Alias NA
Organism Arabidpsis thaliana
Position chr5: 25985089-25990003  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G65050_circ_g.1 AT5G65050_circ_g.2 5_circ_ag.3 AT5G65050_circ_g.4 AT5G65050_circ_g.5 AT5G65050_circ_g.6 5_circ_ag.7 AT5G65050_circ_g.8 5_circ_ag.10 5_circ_ag.11 AT5G65060_circ_g.1 AT5G65060_circ_g.2 AT5G65060_circ_g.3
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTTCTGACCATTGCCTTCGTTTTATCCATGTTCAGGATCTTGCAGAAAAAATTCGGAATTA
TCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGcaagcttgaagaatcaaatgtcgataat
gcaagtgtggatactttaatttctctggaggaacagctcgagactgctctgtccgtaactagag
ctaggaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGCTTGAAGAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAG
CTCGAGACTGCTCTGTCCGTAACTAGAGCTAGGAAGGTATTTTGTACTGCTACTAAGTGATCAA
ACCAATTATCCCAAATTTGTTTTGTTAATTAGTTAGATCTGACTACAAGTATAGTCTTTTGATA
TTTTCGTAATGTCTTGTTGTAGACAGAACTAATGATGGGGGAAGTGAAGTCCCTTCAAAAAACG
GTTAGTACTTTTGTTTTTTATTTGCTATCAAAGCTATATTGTAGGGTAATGCTGATTTTTTAAT
ACTATTAACCTCGGATTCTGCAGATCCTGTAACCAAGTTTAACTCTAGATATATCTCTAGGTCC
TGATTTATTCTTGGCTTTATTTAGATGAAACCCTAATTAGAACCCAAAAAAAAAGCACTTATAA
ACTTGTGATCAAATTCGACTTTTCTCCCTCGATGAATCACCGAATTGGATGAGGATCATGCTCA
GATAGCTTTAGAACTTGTTAGAAATTAATGACCTTATGATCTTGTCCAAACAGGAGAACTTGCT
GAGAGAAGAGAACCAGACTTTGGCTAGCCAGGTGACAAAAACATCTCTTGAAGCTAATTCATCA
GTTGATACACAATAAAAATAGAAATTACACTTGCGTTAAACATATATATATAAAAGTTGAAGGA
CTTTGATTGATGTTAGGCATTTTTTTTGTGAAACCCCCATATATCTTAAAATCTATGATAAAAG
TCCTTTCAAAATTCAAATTTCTTGTTACTATTTAGTTGAATGATCAGTTTTAATTAATGAAATT
TTCCAAAAAAAAACAGCCTTTTTACAATATAGATTGATTTCTTGTTAATGTTTGTTAGCTGTAG
GAAAATAATATAAGAAAGTTTCTTACAGGTGGGGAAGAAGACGTTTCTGGTTATAGAAGGTGAC
AGAGGAATGTCATGGGAAAATGGCTCCGGCAACAAAGTACGGGAGACTCTTCCGCTGCTCAAGT
AATCACCATCATCAACGGCTGAGCTTTCACCTTAAACTTACAGCCTGATTCAGAAGTTTTTACA
AATTTGTAAATTATAAAAAGCTTCATAATAATCTCAACCTTTTTATCTTCCTCGCGCCAATGTG
GAAATTAAGGTTAAAAATAAAATAAAACAGAAGCTCATGCGAAAGAATTGTAAAACTAAGATAA
AGCTATAGTAGATCTTTATTGTACCTTCGTAGACGATATAAGATTTATTCGTGTGTTTGTCTTT
TTGTCTGCAAGTACGGATTGGATTTAAAGTTTTACTTTCTTCAGCGTGAAGAACCCTAGACATA
GAGCTTCTTAATTCTTTTGGTTTTACTTATTTAGTTGTTAGTTATTTGATTACTTGCACGTGAC
GTGGCATAGTGATTTTTTCCTTTTCCAAGTTTATCAGTTCTACTTTTGAGGAACTCAAAAGACT
ATTCTTCCAGAAAGAAAGAATATGGCAGAAAAATACTTGTCTTGGCTGTGCTTCCAGCTTCGGC
CCATTGAGGCCCATCAGAAGTTGTTTTCATTTTTTGTTTCATTTGCAGCTGTTACTGTCTTACT
GATAAGTAAATTAGTAATATAATATATTTCTGTTTAACTTGGTTCGAATTTTTGGGTTTTGGAA
AACATATTAATATCGGATTGGTTTGGCTTTGGATTCATCTTCGAGTTTTGAATGTTTGAATTTT
AATTTTGCGGGTTATTTGTTTCCAATCAAAACAAGTTTATCGGTCAGTTTTAGGGTCAGAACCA
AAATTAAAATAAGCCTAGGATCCTGAGAATGACAAGTCACGAGCGGAATATCGTCATATGATAT
AAGACTAACAAAAACATATTGAAGCTCTCTGATCTTTCCTCTAGATTCGTAAGAGATAGACAGA
TTGAAAGTTTGAAACATACAAACACAGAACGATTGACGACAGCCAAGAACAAGTATTAGACTTA
CCAGTGATACTAATTGTATCCAAAATGGATAACCTTAACTTATTAGTTCTTAATACATCAAAAC
ATGTGAAACAAACAATATAAAACTGCCGGGAAGAAGGAGTAAAACTCGCTTAAAACCAATTTCT
GTTCGGTAGGGATGATCATCGGACCGGTCTAAACCGACTGGATTAAAAGTTTCATTTTAACAAC
ACTCCCCCTAAGGAATTTCAACAAGCGTAAAACTAAAATAAATAACTATTACATGCCTCTTCCT
CGCTTCAAAACGGCACCGTTTCCACTTGTTATTATTTTTCTCTCTATCGTCTAACAAAAAAAAA
AACTGACTTGGGATTTTTTTTCATTTGTCTAGCCCAAAAGAAGAAGATAGAAACGAAGAAAAAA
AGCAAACACATTTTGGGTCCCCGGTGGTTAGGATCAAATTAGGGCACAAACCTTATCGGAGAAA
GAAGCCATGGGAAGAAGAAAAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCA
CTTTCTCCAAACGACGCAAAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATC
TTCCATCGCTGTTGTCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAAG
TAAGCTTCTTTCCTCTTCTGGGTCTCACTCGAGTTTTGTGCTTCTTCTTTTTTTAATCTTATAT
AATAACTTCAAATCTAGGGCTTTTTGCTTCCTTCAAATCAACTGAGATCTCCTCCTTTTTTTTC
TGTGTGAATAGAGCCTATGCGTTACCACAAACCTAATTTGAGAATTGAGATTAAACTTTGAGGT
GGCCAAGATATGTTCTTGGTGTTCGTTTCGTGCTTTTTTTTTTCGAAAATAAGGATTTTTATTT
TATATCTTACCTTTAATTCTTACAAAATTTAATATTGCATGCGATTCAAGAATTTTTTCTACAC
GTGTTGATACATTCTCAATGCTGTTCAAGTACTTTTTCTGTCGCTAATTCATCTGTTGTTCACT
TTCAAGATTCTTTTTTTTTTTTTTTTTTTTTTTAAGAAACAGTGTGTCTATTTGTTAAATTTTG
AGATTTGGTTTGTATCCAATGTTGCAATGCACCTCCCGTGGATTTGTTGATAGAGTAATTGGGG
TTAATGGTAACATTTACCAAGAGTCTTTCGTTTAAATTACATTGTGGAATTACTGATCCCGAAT
GTATTGTAGTCTAGACTACACTGATTGTTTTTAATTTCTCTCCAATGGATTTGCCGATTAAGTA
CATTAAAGGTCTATAGATGATTTTGAAGGTTGATTGTAACGCTTGGATAATTTTCCACATTGAT
GCATCCCCACATGCTACATTACTTATCTAATCGGACATAGATTTTTACCCTTTTCGGTGTGTAC
CATACACAGTATAACTAGATTAATGAGCTCAAGATGTTGTGCCCCTTTTTCTGTTCTTGCAATG
AATTCAGTATGGGATTCTTTGGTAAAGAAACTCAAAATTTTAACTAAGTCTACGGCCACCTTAT
ATATGTAACAGTAGCGTAGTTGATTTTTTAAGTAGATATCTATCGTCGATTTCGACCGATAGGG
TGAAACTAGTAGACTGTTATCATTTCTTCAACTTTGGTTGTGGATATTCCTAACCACATGACCT
TTTGCCATTCGTCTATCTAGAAGAAAGCTTAACTACTTCTACTTCTCTTTTAGAACATTTCTAA
AGTGAGTACACTGAACCAAACGAAATTAACCTACATTGACAAATTAATATTGACAGTGTTTTTT
ATATAATACTTACAAAACATCGTCAACTGGATAAGAAAAATATGTCATCTCGAAAATGGAAATG
TAATATATAGCTTCTTCTCATTGCCTTTTGATGTTAACACCAAAAAAGCTTGATCATGAAAGTG
TTAAACTTATAACAAAGTACTTTGACTTGAGTCACTGTTTAGGTTTTCTTCTTCTGGTGATTAA
TGTTAAACTTAATATGTCACTATATTAACGTATAAAGTGAAGTCTAAGGCAGCTTATATTCATA
TTATTGCATCAACATATCAGTGGACAACACCAATTAGGATAAGAGTTGTGACCTTCCCAGAAAC
CATACCCATTTTCTTGGCTTGTCCTCTAAGGATAATCCTGATATCATATAGTTTTCAATCCGCT
GCTGATTCGGTCGACTCTATGTGTGAATGCTTTGATACTAGGTTGAACTTGGATTGGATAGTCA
TAATCATAATTACATATTTATATGCCTTAATTGATATGAAATTGAAAGAGAATACGAAATTGAA
TGGAAAAGTAAAACAAAAGTTGTCTTTGCAAAAAATAGAGTGACAAAAAAGGAAAATAACTGTA
AACACATCTACAGTGGTTTTATTTTAAGCTACACACTCTTAACATTTTCTAATATGTAGGCGCA
TGCTTCAGTAAAGTTGATTAACAAAAAAGTATTAATTGATGCAATATGTTATAAGCATTCTTTC
ACTCTATAAATTCCTCCAACCGATATATACTGTATCCAATTCATAGTTTTGTGTATATTATTGT
TTCTAATGAAATTTTTGTTTTGTTCATGATATCTCCAGCATGTCAAAGATCATTGATCGTTATG
AAATACATCATGCTGATGAACTTAAAGCCTTAGTAAGTTAGCTACGAACATCATCAAAATTCTC
TGGAATGCAGTTTTTGATGATATTATGGGATAGAATTACTGGTCGAGCCTGAGATAACTCAATG
ATTTGAATTTCTTAAACTGGACTTAATTTTCTTAAGTAACAGTTGTTGCATTTTTAGAAAAAAC
TCAAGAACTTTCACAATCTTTCTGACCATTGCCTTCGTTTTATCCATGTTCAGGATCTTGCAGA
AAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.34192632
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR837-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017