Detail information of 5_circ_ag.11


General Information
CircRNA Name 5_circ_ag.11
ID in PlantcircBase ath_circ_045900
Alias NA
Organism Arabidpsis thaliana
Position chr5: 25986013-25990655  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G65050_circ_g.1 AT5G65050_circ_g.2 5_circ_ag.3 AT5G65050_circ_g.4 AT5G65050_circ_g.5 AT5G65050_circ_g.6 5_circ_ag.7 AT5G65050_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G65060_circ_g.1 AT5G65060_circ_g.2 AT5G65060_circ_g.3
Support reads 8
Tissues root, inflorescences
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTCAGATAGCTTTAGAACTTGTTGGAAACTAATGACCTTTTGATCGTGTCCAAACAGGAGAAG
TTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAGgtggggaagaagacgtttctggttatag
aaggtgacagaggaatgtcatgggaaaatggctccggcaacaaagtacgggagactcttccgct
gctcaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGGGAAGAAGACGTTTCTGGTTATAGAAGGTGACAGAGGAATGTCATGGGAAAATGGCTCCG
GCAACAAAGTACGGGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCTGAGCTTTC
ACCTTAAACTTACAGCCTGATTCAGAAGTTTTTACAAATTTGTAAATTATAAAAAGCTTCATAA
TAATCTCAACCTTTTTATCTTCCTCGCGCCAATGTGGAAATTAAGGTTAAAAATAAAATAAAAC
AGAAGCTCATGCGAAAGAATTGTAAAACTAAGATAAAGCTATAGTAGATCTTTATTGTACCTTC
GTAGACGATATAAGATTTATTCGTGTGTTTGTCTTTTTGTCTGCAAGTACGGATTGGATTTAAA
GTTTTACTTTCTTCAGCGTGAAGAACCCTAGACATAGAGCTTCTTAATTCTTTTGGTTTTACTT
ATTTAGTTGTTAGTTATTTGATTACTTGCACGTGACGTGGCATAGTGATTTTTTCCTTTTCCAA
GTTTATCAGTTCTACTTTTGAGGAACTCAAAAGACTATTCTTCCAGAAAGAAAGAATATGGCAG
AAAAATACTTGTCTTGGCTGTGCTTCCAGCTTCGGCCCATTGAGGCCCATCAGAAGTTGTTTTC
ATTTTTTGTTTCATTTGCAGCTGTTACTGTCTTACTGATAAGTAAATTAGTAATATAATATATT
TCTGTTTAACTTGGTTCGAATTTTTGGGTTTTGGAAAACATATTAATATCGGATTGGTTTGGCT
TTGGATTCATCTTCGAGTTTTGAATGTTTGAATTTTAATTTTGCGGGTTATTTGTTTCCAATCA
AAACAAGTTTATCGGTCAGTTTTAGGGTCAGAACCAAAATTAAAATAAGCCTAGGATCCTGAGA
ATGACAAGTCACGAGCGGAATATCGTCATATGATATAAGACTAACAAAAACATATTGAAGCTCT
CTGATCTTTCCTCTAGATTCGTAAGAGATAGACAGATTGAAAGTTTGAAACATACAAACACAGA
ACGATTGACGACAGCCAAGAACAAGTATTAGACTTACCAGTGATACTAATTGTATCCAAAATGG
ATAACCTTAACTTATTAGTTCTTAATACATCAAAACATGTGAAACAAACAATATAAAACTGCCG
GGAAGAAGGAGTAAAACTCGCTTAAAACCAATTTCTGTTCGGTAGGGATGATCATCGGACCGGT
CTAAACCGACTGGATTAAAAGTTTCATTTTAACAACACTCCCCCTAAGGAATTTCAACAAGCGT
AAAACTAAAATAAATAACTATTACATGCCTCTTCCTCGCTTCAAAACGGCACCGTTTCCACTTG
TTATTATTTTTCTCTCTATCGTCTAACAAAAAAAAAAACTGACTTGGGATTTTTTTTCATTTGT
CTAGCCCAAAAGAAGAAGATAGAAACGAAGAAAAAAAGCAAACACATTTTGGGTCCCCGGTGGT
TAGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAAAAGTCGAGA
TCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAAGGTCTCAT
CGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTGTCGCCGTCTCCGGT
TCCGGAAAACTCTACGACTCTGCCTCCGGTGACAAGTAAGCTTCTTTCCTCTTCTGGGTCTCAC
TCGAGTTTTGTGCTTCTTCTTTTTTTAATCTTATATAATAACTTCAAATCTAGGGCTTTTTGCT
TCCTTCAAATCAACTGAGATCTCCTCCTTTTTTTTCTGTGTGAATAGAGCCTATGCGTTACCAC
AAACCTAATTTGAGAATTGAGATTAAACTTTGAGGTGGCCAAGATATGTTCTTGGTGTTCGTTT
CGTGCTTTTTTTTTTCGAAAATAAGGATTTTTATTTTATATCTTACCTTTAATTCTTACAAAAT
TTAATATTGCATGCGATTCAAGAATTTTTTCTACACGTGTTGATACATTCTCAATGCTGTTCAA
GTACTTTTTCTGTCGCTAATTCATCTGTTGTTCACTTTCAAGATTCTTTTTTTTTTTTTTTTTT
TTTTTAAGAAACAGTGTGTCTATTTGTTAAATTTTGAGATTTGGTTTGTATCCAATGTTGCAAT
GCACCTCCCGTGGATTTGTTGATAGAGTAATTGGGGTTAATGGTAACATTTACCAAGAGTCTTT
CGTTTAAATTACATTGTGGAATTACTGATCCCGAATGTATTGTAGTCTAGACTACACTGATTGT
TTTTAATTTCTCTCCAATGGATTTGCCGATTAAGTACATTAAAGGTCTATAGATGATTTTGAAG
GTTGATTGTAACGCTTGGATAATTTTCCACATTGATGCATCCCCACATGCTACATTACTTATCT
AATCGGACATAGATTTTTACCCTTTTCGGTGTGTACCATACACAGTATAACTAGATTAATGAGC
TCAAGATGTTGTGCCCCTTTTTCTGTTCTTGCAATGAATTCAGTATGGGATTCTTTGGTAAAGA
AACTCAAAATTTTAACTAAGTCTACGGCCACCTTATATATGTAACAGTAGCGTAGTTGATTTTT
TAAGTAGATATCTATCGTCGATTTCGACCGATAGGGTGAAACTAGTAGACTGTTATCATTTCTT
CAACTTTGGTTGTGGATATTCCTAACCACATGACCTTTTGCCATTCGTCTATCTAGAAGAAAGC
TTAACTACTTCTACTTCTCTTTTAGAACATTTCTAAAGTGAGTACACTGAACCAAACGAAATTA
ACCTACATTGACAAATTAATATTGACAGTGTTTTTTATATAATACTTACAAAACATCGTCAACT
GGATAAGAAAAATATGTCATCTCGAAAATGGAAATGTAATATATAGCTTCTTCTCATTGCCTTT
TGATGTTAACACCAAAAAAGCTTGATCATGAAAGTGTTAAACTTATAACAAAGTACTTTGACTT
GAGTCACTGTTTAGGTTTTCTTCTTCTGGTGATTAATGTTAAACTTAATATGTCACTATATTAA
CGTATAAAGTGAAGTCTAAGGCAGCTTATATTCATATTATTGCATCAACATATCAGTGGACAAC
ACCAATTAGGATAAGAGTTGTGACCTTCCCAGAAACCATACCCATTTTCTTGGCTTGTCCTCTA
AGGATAATCCTGATATCATATAGTTTTCAATCCGCTGCTGATTCGGTCGACTCTATGTGTGAAT
GCTTTGATACTAGGTTGAACTTGGATTGGATAGTCATAATCATAATTACATATTTATATGCCTT
AATTGATATGAAATTGAAAGAGAATACGAAATTGAATGGAAAAGTAAAACAAAAGTTGTCTTTG
CAAAAAATAGAGTGACAAAAAAGGAAAATAACTGTAAACACATCTACAGTGGTTTTATTTTAAG
CTACACACTCTTAACATTTTCTAATATGTAGGCGCATGCTTCAGTAAAGTTGATTAACAAAAAA
GTATTAATTGATGCAATATGTTATAAGCATTCTTTCACTCTATAAATTCCTCCAACCGATATAT
ACTGTATCCAATTCATAGTTTTGTGTATATTATTGTTTCTAATGAAATTTTTGTTTTGTTCATG
ATATCTCCAGCATGTCAAAGATCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGC
CTTAGTAAGTTAGCTACGAACATCATCAAAATTCTCTGGAATGCAGTTTTTGATGATATTATGG
GATAGAATTACTGGTCGAGCCTGAGATAACTCAATGATTTGAATTTCTTAAACTGGACTTAATT
TTCTTAAGTAACAGTTGTTGCATTTTTAGAAAAAACTCAAGAACTTTCACAATCTTTCTGACCA
TTGCCTTCGTTTTATCCATGTTCAGGATCTTGCAGAAAAAATTCGGAATTATCTTCCACACAAG
GAGTTACTAGAAATAGTCCAAAGGTTAGCACTAAGACACCTTTTATCTCCCTCTTCTTCTGATA
AAACATACTTCTTTTTCTTTTGGCGACTTATGAATACAGCAAGCTTGAAGAATCAAATGTCGAT
AATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGACTGCTCTGTCAGTAATTA
GAGCTAAGAAGGTATTTCTACTAAGTGATCAAACCAATTATCCCAAAATCTTTTGATTAGTTAG
ATTAAAAAGAATAGTCTTCTGACATAATCCGTAATGTCTTGTTCTAGACAGAACTAATGATGGA
GGATATGAAGTCACTTCAAGAAAGGGTACGTTTAGTGCTTAATTTGGTTTTTAATTGCTATCAA
AGCCATATTGTAGGGTAATGCTGATTCTTGAATACTTTTAACCTCCGATTCTGCAGATCTGGCC
TTTAACCAAGTTTAACTCTAGATATTTCTTTTGGTCTTGTCTTAGTTCCTTATTTGTTCTTGGC
TTTATTTTAGATGAAACCCTAATTTGAACAACAAAAATAAAGCATTTATAAACTCGTGATCATG
GTCAGATAGCTTTAGAACTTGTTGGAAACTAATGACCTTTTGATCGTGTCCAAACAGGAGAAGT
TGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.677550749
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR837-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017