Detail information of Os03g0114300_circ_g.5


General Information
CircRNA Name Os03g0114300_circ_g.5
ID in PlantcircBase osa_circ_017588
Alias NA
Organism Oryza sativa
Position chr3: 802746-805244  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0114300
Parent gene annotation Serine/threonine protein kinase domain containing protein. (Os03
t0114300-01);Similar to ATP binding protein. (Os03t0114300-02)
Parent gene strand +
Alternative splicing Os03g0108800_circ_ag.1 Os03g0109300_circ_g.1 Os03g0109300_circ_g.2 Os03g0109300_circ_g.3 Os03g0109300_circ_g.4 Os03g0109400_circ_g.1 Os03g0109400_circ_g.2 Os03g0109400_circ_g.3 Os03g0109400_circ_g.4 Os03g0109400_circ_g.5 Os03g0109400_circ_g.6 Os03g0109600_circ_g.1 Os03g0109600_circ_g.2 Os03g0109900_circ_g.1 Os03g0109900_circ_g.2 Os03g0109900_circ_g.3 Os03g0109900_circ_g.4 Os03g0109900_circ_g.5 Os03g0109900_circ_g.6 Os03g0110400_circ_g.1 Os03g0110400_circ_g.2 Os03g0110400_circ_g.3 Os03g0110400_circ_g.4 Os03g0110400_circ_g.5 Os03g0110500_circ_g.1 Os03g0110900_circ_g.1 Os03g0111100_circ_g.1 Os03g0111100_circ_g.2 Os03g0111100_circ_g.3 Os03g0111100_circ_g.4 Os03g0111100_circ_g.5 Os03g0111100_circ_g.6 Os03g0111100_circ_g.7 Os03g0111100_circ_g.8 Os03g0111100_circ_g.9 Os03g0111100_circ_g.10 Os03g0111100_circ_g.11 Os03g0111200_circ_g.1 Os03g0111200_circ_g.2 Os03g0111200_circ_g.3 Os03g0111400_circ_g.1 Os03g0111400_circ_g.2 Os03g0111500_circ_g.1 Os03g0111500_circ_g.2 Os03g0111500_circ_g.3 Os03g0111600_circ_g.1 Os03g0111600_circ_g.2 Os03g0111700_circ_g.1 Os03g0111700_circ_g.2 Os03g0111800_circ_g.1 Os03g0112101_circ_g.1 Os03g0112101_circ_g.2 Os03g0112101_circ_igg.1 Os03g0112101_circ_ig.1 Os03g0112101_circ_ig.2 Os03g0112101_circ_ig.3 Os03g0112101_circ_ig.4 Os03g0112101_circ_ig.5 Os03g0112101_circ_ig.6 Os03g0112101_circ_ig.7 Os03g0112101_circ_ig.8 Os03g0112400_circ_g.1 Os03g0112400_circ_igg.1 EPlOSAG00000048437_circ_ig.1 EPlOSAG00000048437_circ_ig.2 Os03g0112600_circ_ig.1 Os03g0112700_circ_g.1 Os03g0112700_circ_g.2 Os03g0112700_circ_g.3 Os03g0112700_circ_g.4 Os03g0112700_circ_g.5 Os03g0112700_circ_g.6 Os03g0112700_circ_g.7 Os03g0112800_circ_g.1 Os03g0112800_circ_g.2 Os03g0113500_circ_g.1 Os03g0113500_circ_g.2 Os03g0113500_circ_g.3 Os03g0113500_circ_g.4 Os03g0113500_circ_g.5 Os03g0113700_circ_g.1 Os03g0113800_circ_g.1 Os03g0113800_circ_g.2 Os03g0113800_circ_g.3 Os03g0113800_circ_g.4 Os03g0113800_circ_g.5 Os03g0113800_circ_g.6 Os03g0113800_circ_g.7 EPlOSAG00000003330_circ_ig.1 Os03g0114000_circ_g.1 Os03g0114300_circ_g.1 Os03g0114300_circ_g.2 Os03g0114300_circ_g.3 Os03g0114300_circ_g.4 Os03g0114300_circ_g.6 Os03g0114300_circ_g.7 Os03g0114300_circ_g.8 Os03g0114300_circ_g.9 Os03g0114300_circ_g.10 Os03g0114300_circ_g.11 Os03g0115100_circ_g.1 Os03g0115400_circ_g.1 Os03g0115400_circ_g.2 Os03g0115400_circ_ig.1 Os03g0115700_circ_g.1 Os03g0116000_circ_g.1 Os03g0116000_circ_g.2 Os03g0116300_circ_g.1 Os03g0116300_circ_g.2 Os03g0116300_circ_g.3 Os03g0116300_circ_g.4 Os03g0116300_circ_g.5 Os03g0116300_circ_g.6 Os03g0116400_circ_g.1 Os03g0116400_circ_g.2 Os03g0116700_circ_g.1 Os03g0116700_circ_g.2 Os03g0116900_circ_igg.1 Os03g0117100_circ_g.1 Os03g0117100_circ_g.2 Os03g0117100_circ_g.3 Os03g0117100_circ_g.4 Os03g0117800_circ_g.1 Os03g0117800_circ_g.2 Os03g0118400_circ_g.1
Support reads 3
Tissues shoot, root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0114300-01:7
Os03t0114300-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGTGAAGTTAAACAAAAAGAAAGGACTTGCTCTGGCCCAATTCTGTGTTCTGGTGTACATAA
TAAATCAATAACTGAAAGCAGTCGCATTTTTGATAGgttcttctcatgacccttcaaaatgcac
caccaggccttgactatgaccgtgataaaagattctcaaaggtagtactagtcctttcagctaa
ttcttggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTTCTCATGACCCTTCAAAATGCACCACCAGGCCTTGACTATGACCGTGATAAAAGATTCT
CAAAGGTAGTACTAGTCCTTTCAGCTAATTCTTGGCTAGCGAGTCTATGTTTTATGGCAGTATC
TGCTTGTTTTAGCCTCAATGTTTACCTCCTAATGAAGGCTTTTCAGTTGTTATCAGTCTTTCAA
GGAAATGGTTGCAATGTGCCTGGTCAAAGATCAAACAAAGAGGCCAACGGCTGAAAAGTTACTA
AAGCACTCATTTTTCAAGAACGCAAAACCTCCAGAGCTGACTGTTAAGAGTATTTTAACTGATT
TGCCCCCTCTGTGGGATCGTGTAAAAGCGCTCCAGGTTTTGCTAGTTTACTTTCCTTTTGTTTT
TACTTAATGATGGAAACATTATGCCTTAATTAATTCCTGTTATCCTGTGCATTTGCAGCTAAAA
GATGCAGCACAATTAGCTTTGAAGAAAATGCCTTCTTCTGAACAGGAGGCACTTTCTATGGTTT
GTGATTTTGATGTTTCTTTTAAGTTCCACTTTGTTTTGTGCTGTTCTTTCATTTGAGTTCATGA
AAATATGCTAGCTAGTTTATTTTACCCACAAACTTCTGAAATAGGCTTTATGGTGGTATTATAT
ATATTCATTTTACAGGCAAATCTTCTGCTTTGTTTTTAATTTATTATCACTGACCATACCAGTC
TTAATGATTTTGGTCAGTAGATGCAGCTTAAAAACAAATTTGTAGAGGGCCAGGGTCAATTTGC
AGTAACACAAATCCCAGCCCTTGCAAAATGAAGTTAGAACTGTGGTATTACTTTCATGCATGGA
TATGTTATTGGTTGAACAAGGACTAGCACAGAATGATTTAAGATCCCAGCATATTAGACTATGT
TTGATGCTTTTTTAATTTAAAAATTAAAATGACGTTAAATTTTTTTATCACTTGTATGCTATGG
TGTCACTATATTTATGCTAAGAATATGATGTCTAAGACACATTTCAGCCAACGCAATGATTTGT
ACGAGAGATCACTTTAGCTAGTCCACCTTACAGGCAGTAGCTAACTTCTATTTTTCTTTCACTT
GTTAGCTCCATGGACGTAATACCCTAATGATTTTTGCACTTCTGTTCCACATACAAACTAATAT
TCATGATAAACATAGTTTGGTTTATTATAGATATGTTTGCACTTTTATTTCACTTACATGATAG
TTTCCTTATCATCTGAATTATCTAATAGAGTGAGTACCAAAGAGGCGTAAGCGCATGGAACTTC
GATATTGAGGATTTAAAGGCTCAAGCATCATTGGTAAAACAACCAGTTTCTTTAGTTCTATATC
GAAATGCTACATTGCTCTCTGATTCATTCTGTTACATTGCTAAGATGTAAAATGACTGTAATTT
AGTCTTATAAGTGAGATTTCCAACCTTTTTGCAGATTCATGATGATGATCCACCTGAAATAAAG
GAAGATGTTGACAATGATAGAATAAATGAAGCTGATAAGGTTAGCTGCTCTCGACTTGATTTTG
TTTCAGACGTAGGCTTGCGTTCTGGTAAGACAGGGTAATAACTGTAGCTAGATGGGATCATGAG
AAAACTTTATCTAGTGTGTCAAATAGAAGAAGTATCACACATGTTTAACTTCAAAGCACAGAAA
AGAGCTTGCCGTTTATCAAATTTGAAAAGTCAGGGTCATTTGTAATGCCACAAATGCTTCTGTT
TAAATCTGGAAGATGCTTATGTTCTGATCCTGTTATTGTTTCTCGCTAATTCTGAGTGCTGCAG
AAACATTTGCACACCATGTTGTCATAGCTTATTGATTTCTTGTAAGTAAGACAAAATTATGTAC
CAAATATGATTCTGTTTCAAGTCATTTATGATTGCTCTGTTTGCAGGAGCCGTTTTCTGGCAAT
CATTTTGGACAACCAAAAATTTTGAGTGGAAAGCACTTCAGGTTGAATCAGTATGCAATATTTT
TTTGTGGCAATGTTTTCTTTAAAAGATATAGATGTTCTATATTGTTCCCTAGCTTGTGATTCTC
AACATCACCAATCGAAGTATATAGGATTCAAGTTTTATTTTATGTGGTGTAGGGTGAAATTTTG
GTCTTATAAATTAAAACAAGCGAAAGATTCAGTGAGCCTTGATGCATGCTTTTCTGTGTTACTG
GTAGTGTGTTCATAATGTTCCACTCTTTTGTTACATTTCAGTGAACAAACTTGTGTCACTGCAG
TAAGTCCAGGGGGGAATATGCATGAGACAAGCAGAGGATTGGTTTCTGAACCTGGTGATGCTGA
TAGTGAAAGGAAAGTTGATGGATATAGAAAACAAGGGTCAGAAAACGAATCGTTACCCTCTACA
TCAAAACATGATTCTGAAGGACAAAACAGTAGTAGTGAAGTTAAACAAAAAGAAAGGACTTGCT
CTGGCCCAATTCTGTGTTCTGGTGTACATAATAAATCAATAACTGAAAGCAGTCGCATTTTTGA
TAG
Conservation Information
Conserved circRNAs osi_circ_012818
PMCS 0.251109324
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017